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Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers.
Rhizobium leguminosarum bv trifolii is a soil-inhabiting bacterium that has the capacity to be an effective nitrogen fixing microsymbiont of a diverse range of annual Trifolium (clover) species. Strain WSM1325 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from root nodules col...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Michigan State University
2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035295/ https://www.ncbi.nlm.nih.gov/pubmed/21304718 http://dx.doi.org/10.4056/sigs.852027 |
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author | Reeve, Wayne O’Hara, Graham Chain, Patrick Ardley, Julie Bräu, Lambert Nandesena, Kemanthi Tiwari, Ravi Copeland, Alex Nolan, Matt Han, Cliff Brettin, Thomas Land, Miriam Ovchinikova, Galina Ivanova, Natalia Mavromatis, Konstantinos Markowitz, Victor Kyrpides, Nikos Melino, Vanessa Denton, Matthew Yates, Ron Howieson, John |
author_facet | Reeve, Wayne O’Hara, Graham Chain, Patrick Ardley, Julie Bräu, Lambert Nandesena, Kemanthi Tiwari, Ravi Copeland, Alex Nolan, Matt Han, Cliff Brettin, Thomas Land, Miriam Ovchinikova, Galina Ivanova, Natalia Mavromatis, Konstantinos Markowitz, Victor Kyrpides, Nikos Melino, Vanessa Denton, Matthew Yates, Ron Howieson, John |
author_sort | Reeve, Wayne |
collection | PubMed |
description | Rhizobium leguminosarum bv trifolii is a soil-inhabiting bacterium that has the capacity to be an effective nitrogen fixing microsymbiont of a diverse range of annual Trifolium (clover) species. Strain WSM1325 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from root nodules collected in 1993 from the Greek Island of Serifos. WSM1325 is produced commercially in Australia as an inoculant for a broad range of annual clovers of Mediterranean origin due to its superior attributes of saprophytic competence, nitrogen fixation and acid-tolerance. Here we describe the basic features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence for a microsymbiont of annual clovers. We reveal that its genome size is 7,418,122 bp encoding 7,232 protein-coding genes and 61 RNA-only encoding genes. This multipartite genome contains 6 distinct replicons; a chromosome of size 4,767,043 bp and 5 plasmids of size 828,924 bp, 660,973 bp, 516,088 bp, 350,312 bp and 294,782 bp. |
format | Text |
id | pubmed-3035295 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30352952011-02-08 Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. Reeve, Wayne O’Hara, Graham Chain, Patrick Ardley, Julie Bräu, Lambert Nandesena, Kemanthi Tiwari, Ravi Copeland, Alex Nolan, Matt Han, Cliff Brettin, Thomas Land, Miriam Ovchinikova, Galina Ivanova, Natalia Mavromatis, Konstantinos Markowitz, Victor Kyrpides, Nikos Melino, Vanessa Denton, Matthew Yates, Ron Howieson, John Stand Genomic Sci Short Genome Reports Rhizobium leguminosarum bv trifolii is a soil-inhabiting bacterium that has the capacity to be an effective nitrogen fixing microsymbiont of a diverse range of annual Trifolium (clover) species. Strain WSM1325 is an aerobic, motile, non-spore forming, Gram-negative rod isolated from root nodules collected in 1993 from the Greek Island of Serifos. WSM1325 is produced commercially in Australia as an inoculant for a broad range of annual clovers of Mediterranean origin due to its superior attributes of saprophytic competence, nitrogen fixation and acid-tolerance. Here we describe the basic features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence for a microsymbiont of annual clovers. We reveal that its genome size is 7,418,122 bp encoding 7,232 protein-coding genes and 61 RNA-only encoding genes. This multipartite genome contains 6 distinct replicons; a chromosome of size 4,767,043 bp and 5 plasmids of size 828,924 bp, 660,973 bp, 516,088 bp, 350,312 bp and 294,782 bp. Michigan State University 2010-06-15 /pmc/articles/PMC3035295/ /pubmed/21304718 http://dx.doi.org/10.4056/sigs.852027 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Reeve, Wayne O’Hara, Graham Chain, Patrick Ardley, Julie Bräu, Lambert Nandesena, Kemanthi Tiwari, Ravi Copeland, Alex Nolan, Matt Han, Cliff Brettin, Thomas Land, Miriam Ovchinikova, Galina Ivanova, Natalia Mavromatis, Konstantinos Markowitz, Victor Kyrpides, Nikos Melino, Vanessa Denton, Matthew Yates, Ron Howieson, John Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. |
title | Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. |
title_full | Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. |
title_fullStr | Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. |
title_full_unstemmed | Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. |
title_short | Complete genome sequence of Rhizobium leguminosarum bv. trifolii strain WSM1325, an effective microsymbiont of annual Mediterranean clovers. |
title_sort | complete genome sequence of rhizobium leguminosarum bv. trifolii strain wsm1325, an effective microsymbiont of annual mediterranean clovers. |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035295/ https://www.ncbi.nlm.nih.gov/pubmed/21304718 http://dx.doi.org/10.4056/sigs.852027 |
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