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author Djao, Olivier Duplex Ngatchou
Zhang, Xiaojing
Lucas, Susan
Lapidus, Alla
Del Rio, Tijana Glavina
Nolan, Matt
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Ovchinnikova, Galina
Pati, Amrita
Brambilla, Evelyne
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Rohde, Manfred
Sikorski, Johannes
Spring, Stefan
Göker, Markus
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_facet Djao, Olivier Duplex Ngatchou
Zhang, Xiaojing
Lucas, Susan
Lapidus, Alla
Del Rio, Tijana Glavina
Nolan, Matt
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Ovchinnikova, Galina
Pati, Amrita
Brambilla, Evelyne
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Rohde, Manfred
Sikorski, Johannes
Spring, Stefan
Göker, Markus
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
author_sort Djao, Olivier Duplex Ngatchou
collection PubMed
description Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genus Syntrophothermus and the second in the family Syntrophomonadaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,405,559 bp long genome with its 2,385 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
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publishDate 2010
publisher Michigan State University
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spelling pubmed-30353032011-02-08 Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)) Djao, Olivier Duplex Ngatchou Zhang, Xiaojing Lucas, Susan Lapidus, Alla Del Rio, Tijana Glavina Nolan, Matt Tice, Hope Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Brambilla, Evelyne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Sikorski, Johannes Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genus Syntrophothermus and the second in the family Syntrophomonadaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,405,559 bp long genome with its 2,385 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2010-12-15 /pmc/articles/PMC3035303/ /pubmed/21304731 http://dx.doi.org/10.4056/sigs.1233249 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Djao, Olivier Duplex Ngatchou
Zhang, Xiaojing
Lucas, Susan
Lapidus, Alla
Del Rio, Tijana Glavina
Nolan, Matt
Tice, Hope
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Ovchinnikova, Galina
Pati, Amrita
Brambilla, Evelyne
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D.
Rohde, Manfred
Sikorski, Johannes
Spring, Stefan
Göker, Markus
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T))
title Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T))
title_full Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T))
title_fullStr Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T))
title_full_unstemmed Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T))
title_short Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T))
title_sort complete genome sequence of syntrophothermus lipocalidus type strain (tgb-c1(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035303/
https://www.ncbi.nlm.nih.gov/pubmed/21304731
http://dx.doi.org/10.4056/sigs.1233249
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