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Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T))
Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrat...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Michigan State University
2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035303/ https://www.ncbi.nlm.nih.gov/pubmed/21304731 http://dx.doi.org/10.4056/sigs.1233249 |
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author | Djao, Olivier Duplex Ngatchou Zhang, Xiaojing Lucas, Susan Lapidus, Alla Del Rio, Tijana Glavina Nolan, Matt Tice, Hope Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Brambilla, Evelyne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Sikorski, Johannes Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter |
author_facet | Djao, Olivier Duplex Ngatchou Zhang, Xiaojing Lucas, Susan Lapidus, Alla Del Rio, Tijana Glavina Nolan, Matt Tice, Hope Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Brambilla, Evelyne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Sikorski, Johannes Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter |
author_sort | Djao, Olivier Duplex Ngatchou |
collection | PubMed |
description | Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genus Syntrophothermus and the second in the family Syntrophomonadaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,405,559 bp long genome with its 2,385 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Text |
id | pubmed-3035303 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-30353032011-02-08 Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)) Djao, Olivier Duplex Ngatchou Zhang, Xiaojing Lucas, Susan Lapidus, Alla Del Rio, Tijana Glavina Nolan, Matt Tice, Hope Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Brambilla, Evelyne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Sikorski, Johannes Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Stand Genomic Sci Short Genome Reports Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step of the degradation of organic maters, and for releasing products which serve as substrates for other microorganisms. It also contributes significantly to maintain a regular pH in its environment by removing the fatty acids through β-oxidation. The strain is able to metabolize isobutyrate and butyrate, which are the substrate and the product of degradation of the substrate, respectively. This is the first complete genome sequence of a member of the genus Syntrophothermus and the second in the family Syntrophomonadaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,405,559 bp long genome with its 2,385 protein-coding and 55 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2010-12-15 /pmc/articles/PMC3035303/ /pubmed/21304731 http://dx.doi.org/10.4056/sigs.1233249 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Djao, Olivier Duplex Ngatchou Zhang, Xiaojing Lucas, Susan Lapidus, Alla Del Rio, Tijana Glavina Nolan, Matt Tice, Hope Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Brambilla, Evelyne Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Chang, Yun-Juan Jeffries, Cynthia D. Rohde, Manfred Sikorski, Johannes Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)) |
title | Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)) |
title_full | Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)) |
title_fullStr | Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)) |
title_full_unstemmed | Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)) |
title_short | Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1(T)) |
title_sort | complete genome sequence of syntrophothermus lipocalidus type strain (tgb-c1(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035303/ https://www.ncbi.nlm.nih.gov/pubmed/21304731 http://dx.doi.org/10.4056/sigs.1233249 |
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