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Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism

Marinobacter adhaerens HP15 is the type strain of a newly identified marine species, which is phylogenetically related to M. flavimaris, M. algicola, and M. aquaeolei. It is of special interest for research on marine aggregate formation because it showed specific attachment to diatom cells. In vitro...

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Autores principales: Gärdes, Astrid, Kaeppel, Eva, Shehzad, Aamir, Seebah, Shalin, Teeling, Hanno, Yarza, Pablo, Glöckner, Frank Oliver, Grossart, Hans-Peter, Ullrich, Matthias S.
Formato: Texto
Lenguaje:English
Publicado: Michigan State University 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035377/
https://www.ncbi.nlm.nih.gov/pubmed/21304739
http://dx.doi.org/10.4056/sigs.922139
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author Gärdes, Astrid
Kaeppel, Eva
Shehzad, Aamir
Seebah, Shalin
Teeling, Hanno
Yarza, Pablo
Glöckner, Frank Oliver
Grossart, Hans-Peter
Ullrich, Matthias S.
author_facet Gärdes, Astrid
Kaeppel, Eva
Shehzad, Aamir
Seebah, Shalin
Teeling, Hanno
Yarza, Pablo
Glöckner, Frank Oliver
Grossart, Hans-Peter
Ullrich, Matthias S.
author_sort Gärdes, Astrid
collection PubMed
description Marinobacter adhaerens HP15 is the type strain of a newly identified marine species, which is phylogenetically related to M. flavimaris, M. algicola, and M. aquaeolei. It is of special interest for research on marine aggregate formation because it showed specific attachment to diatom cells. In vitro it led to exopolymer formation and aggregation of these algal cells to form marine snow particles. M. adhaerens HP15 is a free-living, motile, rod-shaped, Gram-negative gammaproteobacterium, which was originally isolated from marine particles sampled in the German Wadden Sea. M. adhaerens HP15 grows heterotrophically on various media, is easy to access genetically, and serves as a model organism to investigate the cellular and molecular interactions with the diatom Thalassiosira weissflogii. Here we describe the complete and annotated genome sequence of M. adhaerens HP15 as well as some details on flagella-associated genes. M. adhaerens HP15 possesses three replicons; the chromosome comprises 4,422,725 bp and codes for 4,180 protein-coding genes, 51 tRNAs and three rRNA operons, while the two circular plasmids are ~187 kb and ~42 kb in size and contain 178 and 52 protein-coding genes, respectively.
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spelling pubmed-30353772011-02-08 Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism Gärdes, Astrid Kaeppel, Eva Shehzad, Aamir Seebah, Shalin Teeling, Hanno Yarza, Pablo Glöckner, Frank Oliver Grossart, Hans-Peter Ullrich, Matthias S. Stand Genomic Sci Short Genome Reports Marinobacter adhaerens HP15 is the type strain of a newly identified marine species, which is phylogenetically related to M. flavimaris, M. algicola, and M. aquaeolei. It is of special interest for research on marine aggregate formation because it showed specific attachment to diatom cells. In vitro it led to exopolymer formation and aggregation of these algal cells to form marine snow particles. M. adhaerens HP15 is a free-living, motile, rod-shaped, Gram-negative gammaproteobacterium, which was originally isolated from marine particles sampled in the German Wadden Sea. M. adhaerens HP15 grows heterotrophically on various media, is easy to access genetically, and serves as a model organism to investigate the cellular and molecular interactions with the diatom Thalassiosira weissflogii. Here we describe the complete and annotated genome sequence of M. adhaerens HP15 as well as some details on flagella-associated genes. M. adhaerens HP15 possesses three replicons; the chromosome comprises 4,422,725 bp and codes for 4,180 protein-coding genes, 51 tRNAs and three rRNA operons, while the two circular plasmids are ~187 kb and ~42 kb in size and contain 178 and 52 protein-coding genes, respectively. Michigan State University 2010-09-28 /pmc/articles/PMC3035377/ /pubmed/21304739 http://dx.doi.org/10.4056/sigs.922139 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Gärdes, Astrid
Kaeppel, Eva
Shehzad, Aamir
Seebah, Shalin
Teeling, Hanno
Yarza, Pablo
Glöckner, Frank Oliver
Grossart, Hans-Peter
Ullrich, Matthias S.
Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_full Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_fullStr Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_full_unstemmed Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_short Complete genome sequence of Marinobacter adhaerens type strain (HP15), a diatom-interacting marine microorganism
title_sort complete genome sequence of marinobacter adhaerens type strain (hp15), a diatom-interacting marine microorganism
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035377/
https://www.ncbi.nlm.nih.gov/pubmed/21304739
http://dx.doi.org/10.4056/sigs.922139
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