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Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping

Immunophenotypic characterization of B-cell chronic lymphoproliferative disorders (B-CLPD) is becoming increasingly complex due to usage of progressively larger panels of reagents and a high number of World Health Organization (WHO) entities. Typically, data analysis is performed separately for each...

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Autores principales: Costa, E S, Pedreira, C E, Barrena, S, Lecrevisse, Q, Flores, J, Quijano, S, Almeida, J, del Carmen García- Macias, M, Bottcher, S, Van Dongen, J J M, Orfao, A
Formato: Texto
Lenguaje:English
Publicado: Nature Publishing Group 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035971/
https://www.ncbi.nlm.nih.gov/pubmed/20844562
http://dx.doi.org/10.1038/leu.2010.160
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author Costa, E S
Pedreira, C E
Barrena, S
Lecrevisse, Q
Flores, J
Quijano, S
Almeida, J
del Carmen García- Macias, M
Bottcher, S
Van Dongen, J J M
Orfao, A
author_facet Costa, E S
Pedreira, C E
Barrena, S
Lecrevisse, Q
Flores, J
Quijano, S
Almeida, J
del Carmen García- Macias, M
Bottcher, S
Van Dongen, J J M
Orfao, A
author_sort Costa, E S
collection PubMed
description Immunophenotypic characterization of B-cell chronic lymphoproliferative disorders (B-CLPD) is becoming increasingly complex due to usage of progressively larger panels of reagents and a high number of World Health Organization (WHO) entities. Typically, data analysis is performed separately for each stained aliquot of a sample; subsequently, an expert interprets the overall immunophenotypic profile (IP) of neoplastic B-cells and assigns it to specific diagnostic categories. We constructed a principal component analysis (PCA)-based tool to guide immunophenotypic classification of B-CLPD. Three reference groups of immunophenotypic data files—B-cell chronic lymphocytic leukemias (B-CLL; n=10), mantle cell (MCL; n=10) and follicular lymphomas (FL; n=10)—were built. Subsequently, each of the 175 cases studied was evaluated and assigned to either one of the three reference groups or to none of them (other B-CLPD). Most cases (89%) were correctly assigned to their corresponding WHO diagnostic group with overall positive and negative predictive values of 89 and 96%, respectively. The efficiency of the PCA-based approach was particularly high among typical B-CLL, MCL and FL vs other B-CLPD cases. In summary, PCA-guided immunophenotypic classification of B-CLPD is a promising tool for standardized interpretation of tumor IP, their classification into well-defined entities and comprehensive evaluation of antibody panels.
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spelling pubmed-30359712011-03-07 Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping Costa, E S Pedreira, C E Barrena, S Lecrevisse, Q Flores, J Quijano, S Almeida, J del Carmen García- Macias, M Bottcher, S Van Dongen, J J M Orfao, A Leukemia Original Article Immunophenotypic characterization of B-cell chronic lymphoproliferative disorders (B-CLPD) is becoming increasingly complex due to usage of progressively larger panels of reagents and a high number of World Health Organization (WHO) entities. Typically, data analysis is performed separately for each stained aliquot of a sample; subsequently, an expert interprets the overall immunophenotypic profile (IP) of neoplastic B-cells and assigns it to specific diagnostic categories. We constructed a principal component analysis (PCA)-based tool to guide immunophenotypic classification of B-CLPD. Three reference groups of immunophenotypic data files—B-cell chronic lymphocytic leukemias (B-CLL; n=10), mantle cell (MCL; n=10) and follicular lymphomas (FL; n=10)—were built. Subsequently, each of the 175 cases studied was evaluated and assigned to either one of the three reference groups or to none of them (other B-CLPD). Most cases (89%) were correctly assigned to their corresponding WHO diagnostic group with overall positive and negative predictive values of 89 and 96%, respectively. The efficiency of the PCA-based approach was particularly high among typical B-CLL, MCL and FL vs other B-CLPD cases. In summary, PCA-guided immunophenotypic classification of B-CLPD is a promising tool for standardized interpretation of tumor IP, their classification into well-defined entities and comprehensive evaluation of antibody panels. Nature Publishing Group 2010-11 2010-09-16 /pmc/articles/PMC3035971/ /pubmed/20844562 http://dx.doi.org/10.1038/leu.2010.160 Text en Copyright © 2010 Macmillan Publishers Limited http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under the Creative Commons Attribution-NonCommercial-No Derivative Works 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Original Article
Costa, E S
Pedreira, C E
Barrena, S
Lecrevisse, Q
Flores, J
Quijano, S
Almeida, J
del Carmen García- Macias, M
Bottcher, S
Van Dongen, J J M
Orfao, A
Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping
title Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping
title_full Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping
title_fullStr Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping
title_full_unstemmed Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping
title_short Automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of B-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping
title_sort automated pattern-guided principal component analysis vs expert-based immunophenotypic classification of b-cell chronic lymphoproliferative disorders: a step forward in the standardization of clinical immunophenotyping
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3035971/
https://www.ncbi.nlm.nih.gov/pubmed/20844562
http://dx.doi.org/10.1038/leu.2010.160
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