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The Balance of Weak and Strong Interactions in Genetic Networks

Genetic interactions are being quantitatively characterized in a comprehensive way in several model organisms. These data are then globally represented in terms of genetic networks. How are interaction strengths distributed in these networks? And what type of functional organization of the underlyin...

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Detalles Bibliográficos
Autor principal: Poyatos, Juan F.
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3037365/
https://www.ncbi.nlm.nih.gov/pubmed/21347355
http://dx.doi.org/10.1371/journal.pone.0014598
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author Poyatos, Juan F.
author_facet Poyatos, Juan F.
author_sort Poyatos, Juan F.
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description Genetic interactions are being quantitatively characterized in a comprehensive way in several model organisms. These data are then globally represented in terms of genetic networks. How are interaction strengths distributed in these networks? And what type of functional organization of the underlying genomic systems is revealed by such distribution patterns? Here, I found that weak interactions are important for the structure of genetic buffering between signaling pathways in Caenorhabditis elegans, and that the strength of the association between two genes correlates with the number of common interactors they exhibit. I also determined that this network includes genetic cascades balancing weak and strong links, and that its hubs act as particularly strong genetic modifiers; both patterns also identified in Saccharomyces cerevisae networks. In yeast, I further showed a relation, although weak, between interaction strengths and some phenotypic/evolutionary features of the corresponding target genes. Overall, this work demonstrates a non-random organization of interaction strengths in genetic networks, a feature common to other complex networks, and that could reflect in this context how genetic variation is eventually influencing the phenotype.
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spelling pubmed-30373652011-02-23 The Balance of Weak and Strong Interactions in Genetic Networks Poyatos, Juan F. PLoS One Research Article Genetic interactions are being quantitatively characterized in a comprehensive way in several model organisms. These data are then globally represented in terms of genetic networks. How are interaction strengths distributed in these networks? And what type of functional organization of the underlying genomic systems is revealed by such distribution patterns? Here, I found that weak interactions are important for the structure of genetic buffering between signaling pathways in Caenorhabditis elegans, and that the strength of the association between two genes correlates with the number of common interactors they exhibit. I also determined that this network includes genetic cascades balancing weak and strong links, and that its hubs act as particularly strong genetic modifiers; both patterns also identified in Saccharomyces cerevisae networks. In yeast, I further showed a relation, although weak, between interaction strengths and some phenotypic/evolutionary features of the corresponding target genes. Overall, this work demonstrates a non-random organization of interaction strengths in genetic networks, a feature common to other complex networks, and that could reflect in this context how genetic variation is eventually influencing the phenotype. Public Library of Science 2011-02-10 /pmc/articles/PMC3037365/ /pubmed/21347355 http://dx.doi.org/10.1371/journal.pone.0014598 Text en Juan F. Poyatos. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Poyatos, Juan F.
The Balance of Weak and Strong Interactions in Genetic Networks
title The Balance of Weak and Strong Interactions in Genetic Networks
title_full The Balance of Weak and Strong Interactions in Genetic Networks
title_fullStr The Balance of Weak and Strong Interactions in Genetic Networks
title_full_unstemmed The Balance of Weak and Strong Interactions in Genetic Networks
title_short The Balance of Weak and Strong Interactions in Genetic Networks
title_sort balance of weak and strong interactions in genetic networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3037365/
https://www.ncbi.nlm.nih.gov/pubmed/21347355
http://dx.doi.org/10.1371/journal.pone.0014598
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