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An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis

BACKGROUND: Patterns that arise from an ecological process can be driven as much from the landscape over which the process is run as it is by some intrinsic properties of the process itself. The disentanglement of these effects is aided if it possible to run models of the process over artificial lan...

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Detalles Bibliográficos
Autores principales: Chipperfield, Joseph D., Dytham, Calvin, Hovestadt, Thomas
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039648/
https://www.ncbi.nlm.nih.gov/pubmed/21347228
http://dx.doi.org/10.1371/journal.pone.0017040
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author Chipperfield, Joseph D.
Dytham, Calvin
Hovestadt, Thomas
author_facet Chipperfield, Joseph D.
Dytham, Calvin
Hovestadt, Thomas
author_sort Chipperfield, Joseph D.
collection PubMed
description BACKGROUND: Patterns that arise from an ecological process can be driven as much from the landscape over which the process is run as it is by some intrinsic properties of the process itself. The disentanglement of these effects is aided if it possible to run models of the process over artificial landscapes with controllable spatial properties. A number of different methods for the generation of so-called ‘neutral landscapes’ have been developed to provide just such a tool. Of these methods, a particular class that simulate fractional Brownian motion have shown particular promise. The existing methods of simulating fractional Brownian motion suffer from a number of problems however: they are often not easily generalisable to an arbitrary number of dimensions and produce outputs that can exhibit some undesirable artefacts. METHODOLOGY: We describe here an updated algorithm for the generation of neutral landscapes by fractional Brownian motion that do not display such undesirable properties. Using Monte Carlo simulation we assess the anisotropic properties of landscapes generated using the new algorithm described in this paper and compare it against a popular benchmark algorithm. CONCLUSION/SIGNIFICANCE: The results show that the existing algorithm creates landscapes with values strongly correlated in the diagonal direction and that the new algorithm presented here corrects this artefact. A number of extensions of the algorithm described here are also highlighted: we describe how the algorithm can be employed to generate landscapes that display different properties in different dimensions and how they can be combined with an environmental gradient to produce landscapes that combine environmental variation at the local and macro scales.
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spelling pubmed-30396482011-02-23 An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis Chipperfield, Joseph D. Dytham, Calvin Hovestadt, Thomas PLoS One Research Article BACKGROUND: Patterns that arise from an ecological process can be driven as much from the landscape over which the process is run as it is by some intrinsic properties of the process itself. The disentanglement of these effects is aided if it possible to run models of the process over artificial landscapes with controllable spatial properties. A number of different methods for the generation of so-called ‘neutral landscapes’ have been developed to provide just such a tool. Of these methods, a particular class that simulate fractional Brownian motion have shown particular promise. The existing methods of simulating fractional Brownian motion suffer from a number of problems however: they are often not easily generalisable to an arbitrary number of dimensions and produce outputs that can exhibit some undesirable artefacts. METHODOLOGY: We describe here an updated algorithm for the generation of neutral landscapes by fractional Brownian motion that do not display such undesirable properties. Using Monte Carlo simulation we assess the anisotropic properties of landscapes generated using the new algorithm described in this paper and compare it against a popular benchmark algorithm. CONCLUSION/SIGNIFICANCE: The results show that the existing algorithm creates landscapes with values strongly correlated in the diagonal direction and that the new algorithm presented here corrects this artefact. A number of extensions of the algorithm described here are also highlighted: we describe how the algorithm can be employed to generate landscapes that display different properties in different dimensions and how they can be combined with an environmental gradient to produce landscapes that combine environmental variation at the local and macro scales. Public Library of Science 2011-02-15 /pmc/articles/PMC3039648/ /pubmed/21347228 http://dx.doi.org/10.1371/journal.pone.0017040 Text en Chipperfield et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Chipperfield, Joseph D.
Dytham, Calvin
Hovestadt, Thomas
An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis
title An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis
title_full An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis
title_fullStr An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis
title_full_unstemmed An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis
title_short An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis
title_sort updated algorithm for the generation of neutral landscapes by spectral synthesis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039648/
https://www.ncbi.nlm.nih.gov/pubmed/21347228
http://dx.doi.org/10.1371/journal.pone.0017040
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