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Metabolic modeling of Rosmarinic acid biosynthetic pathway
Rosmarinic acid (RA) is an ester of caffeic acid and 3, 4‐dihydroxyphenyllacticacid. It is commonly found in Coleus blumei, Salvia officinalis, Melissa officinalis and Rosmarinus officinalis. The biosynthesis of RA starts with precursor molecules L‐phenylalanine and L‐tyrosine. Simulation of RA bios...
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Formato: | Texto |
Lenguaje: | English |
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Biomedical Informatics
2010
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040479/ https://www.ncbi.nlm.nih.gov/pubmed/21364781 |
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author | Sundaram, Shanthy Tripathi, Ashutosh Gupta, Deepak K |
author_facet | Sundaram, Shanthy Tripathi, Ashutosh Gupta, Deepak K |
author_sort | Sundaram, Shanthy |
collection | PubMed |
description | Rosmarinic acid (RA) is an ester of caffeic acid and 3, 4‐dihydroxyphenyllacticacid. It is commonly found in Coleus blumei, Salvia officinalis, Melissa officinalis and Rosmarinus officinalis. The biosynthesis of RA starts with precursor molecules L‐phenylalanine and L‐tyrosine. Simulation of RA biosynthetic pathway was done using Gepasi Software, includes the reaction kinetics of each step of the pathway and different integration methods such as Euler's method. Optimization of the significant parameters responsible for RA biosynthesis was carried out. As the goal of the work was to increase the productivity of i.e. to maximize the concentration of the RA, the final concentration of RA ([RA]t) was selected as an objective function and selected initial concentration of the Caffeoyl‐3’‐4’hydroxyphenyllactic acid (3’C4HPLA) as parameter constraint and varied its initial concentration as: 0≤ [3’C4HPLA]i ≤ 0.025. Several optimization methods such as Simulated annealing, Evolutionary algorithms and Genetic algorithms were used to optimize the objective function. After optimization the final concentration of RA was slightly higher (4.566132e‐002 mM) than before optimization (4.047119e‐ 002 mM). On the basis of results obtained, it is clear that 4‐hydroxyphenyllactic acid and 3’C4HPLA play major role in the high productivity of the RA. |
format | Text |
id | pubmed-3040479 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-30404792011-03-01 Metabolic modeling of Rosmarinic acid biosynthetic pathway Sundaram, Shanthy Tripathi, Ashutosh Gupta, Deepak K Bioinformation Hypothesis Rosmarinic acid (RA) is an ester of caffeic acid and 3, 4‐dihydroxyphenyllacticacid. It is commonly found in Coleus blumei, Salvia officinalis, Melissa officinalis and Rosmarinus officinalis. The biosynthesis of RA starts with precursor molecules L‐phenylalanine and L‐tyrosine. Simulation of RA biosynthetic pathway was done using Gepasi Software, includes the reaction kinetics of each step of the pathway and different integration methods such as Euler's method. Optimization of the significant parameters responsible for RA biosynthesis was carried out. As the goal of the work was to increase the productivity of i.e. to maximize the concentration of the RA, the final concentration of RA ([RA]t) was selected as an objective function and selected initial concentration of the Caffeoyl‐3’‐4’hydroxyphenyllactic acid (3’C4HPLA) as parameter constraint and varied its initial concentration as: 0≤ [3’C4HPLA]i ≤ 0.025. Several optimization methods such as Simulated annealing, Evolutionary algorithms and Genetic algorithms were used to optimize the objective function. After optimization the final concentration of RA was slightly higher (4.566132e‐002 mM) than before optimization (4.047119e‐ 002 mM). On the basis of results obtained, it is clear that 4‐hydroxyphenyllactic acid and 3’C4HPLA play major role in the high productivity of the RA. Biomedical Informatics 2010-10-06 /pmc/articles/PMC3040479/ /pubmed/21364781 Text en © 2010 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Hypothesis Sundaram, Shanthy Tripathi, Ashutosh Gupta, Deepak K Metabolic modeling of Rosmarinic acid biosynthetic pathway |
title | Metabolic modeling of Rosmarinic acid biosynthetic pathway |
title_full | Metabolic modeling of Rosmarinic acid biosynthetic pathway |
title_fullStr | Metabolic modeling of Rosmarinic acid biosynthetic pathway |
title_full_unstemmed | Metabolic modeling of Rosmarinic acid biosynthetic pathway |
title_short | Metabolic modeling of Rosmarinic acid biosynthetic pathway |
title_sort | metabolic modeling of rosmarinic acid biosynthetic pathway |
topic | Hypothesis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3040479/ https://www.ncbi.nlm.nih.gov/pubmed/21364781 |
work_keys_str_mv | AT sundaramshanthy metabolicmodelingofrosmarinicacidbiosyntheticpathway AT tripathiashutosh metabolicmodelingofrosmarinicacidbiosyntheticpathway AT guptadeepakk metabolicmodelingofrosmarinicacidbiosyntheticpathway |