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SeqCalc: A portable bioinformatics software for sequence analysis
Rapid genome sequencing enriched biological databases with enormous sequence data. Yet it remains a daunting task to unravel this information. However experimental and computational researchers lead their own way in analyzing sequence information. Here we introduce a standalone portable tool named “...
Autores principales: | , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041003/ https://www.ncbi.nlm.nih.gov/pubmed/21364786 |
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author | Vignesh, Dhandapani Parameswari, Paul Jin, Kim Hae Pyo, Lim Yong |
author_facet | Vignesh, Dhandapani Parameswari, Paul Jin, Kim Hae Pyo, Lim Yong |
author_sort | Vignesh, Dhandapani |
collection | PubMed |
description | Rapid genome sequencing enriched biological databases with enormous sequence data. Yet it remains a daunting task to unravel this information. However experimental and computational researchers lead their own way in analyzing sequence information. Here we introduce a standalone portable tool named “SeqCalc” that would assist the research personnel in computational sequence analysis and automated experimental calculations. Although several tools are available online for sequence analysis they serve only for one or two purposes. SeqCalc is a package of offline program, developed using Perl and TCL/Tk scripts that serve ten different applications. This tool would be an initiative to both experimental and computational researchers in their routine research. SeqCalc is executable in all windows operating systems. AVAILABILITY: SeqCalc can be freely downloaded at http://code.google.com/p/seqcalc. |
format | Text |
id | pubmed-3041003 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-30410032011-03-01 SeqCalc: A portable bioinformatics software for sequence analysis Vignesh, Dhandapani Parameswari, Paul Jin, Kim Hae Pyo, Lim Yong Bioinformation Software Rapid genome sequencing enriched biological databases with enormous sequence data. Yet it remains a daunting task to unravel this information. However experimental and computational researchers lead their own way in analyzing sequence information. Here we introduce a standalone portable tool named “SeqCalc” that would assist the research personnel in computational sequence analysis and automated experimental calculations. Although several tools are available online for sequence analysis they serve only for one or two purposes. SeqCalc is a package of offline program, developed using Perl and TCL/Tk scripts that serve ten different applications. This tool would be an initiative to both experimental and computational researchers in their routine research. SeqCalc is executable in all windows operating systems. AVAILABILITY: SeqCalc can be freely downloaded at http://code.google.com/p/seqcalc. Biomedical Informatics 2010-09-20 /pmc/articles/PMC3041003/ /pubmed/21364786 Text en © 2010 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Software Vignesh, Dhandapani Parameswari, Paul Jin, Kim Hae Pyo, Lim Yong SeqCalc: A portable bioinformatics software for sequence analysis |
title | SeqCalc: A portable bioinformatics software for sequence analysis |
title_full | SeqCalc: A portable bioinformatics software for sequence analysis |
title_fullStr | SeqCalc: A portable bioinformatics software for sequence analysis |
title_full_unstemmed | SeqCalc: A portable bioinformatics software for sequence analysis |
title_short | SeqCalc: A portable bioinformatics software for sequence analysis |
title_sort | seqcalc: a portable bioinformatics software for sequence analysis |
topic | Software |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041003/ https://www.ncbi.nlm.nih.gov/pubmed/21364786 |
work_keys_str_mv | AT vigneshdhandapani seqcalcaportablebioinformaticssoftwareforsequenceanalysis AT parameswaripaul seqcalcaportablebioinformaticssoftwareforsequenceanalysis AT jinkimhae seqcalcaportablebioinformaticssoftwareforsequenceanalysis AT pyolimyong seqcalcaportablebioinformaticssoftwareforsequenceanalysis |