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Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants
Glutathione S-transferases (GSTs) exist in various eukaryotes and function in detoxification of xenobiotics and in response to abiotic and biotic stresses. We have carried out a genome-wide survey of this gene family in 10 plant genomes. Our data show that tandem duplication has been regarded as the...
Autores principales: | , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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Oxford University Press
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041506/ https://www.ncbi.nlm.nih.gov/pubmed/21169340 http://dx.doi.org/10.1093/dnares/dsq031 |
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author | Chi, Yunhua Cheng, Yansong Vanitha, Jeevanandam Kumar, Nadimuthu Ramamoorthy, Rengasamy Ramachandran, Srinivasan Jiang, Shu-Ye |
author_facet | Chi, Yunhua Cheng, Yansong Vanitha, Jeevanandam Kumar, Nadimuthu Ramamoorthy, Rengasamy Ramachandran, Srinivasan Jiang, Shu-Ye |
author_sort | Chi, Yunhua |
collection | PubMed |
description | Glutathione S-transferases (GSTs) exist in various eukaryotes and function in detoxification of xenobiotics and in response to abiotic and biotic stresses. We have carried out a genome-wide survey of this gene family in 10 plant genomes. Our data show that tandem duplication has been regarded as the major expansion mechanism and both monocot and dicot plants may have practiced different expansion and evolutionary history. Non-synonymous substitutions per site (Ka) and synonymous substitutions per site (Ks) analyses showed that N- and C-terminal functional domains of GSTs (GST_N and GST_C) seem to have evolved under a strong purifying selection (Ka/Ks < 1) under different selective pressures. Differential evolutionary rates between GST_N and GST_C and high degree of expression divergence have been regarded as the major drivers for the retention of duplicated genes and the adaptability to various stresses. Expression profiling also indicated that the gene family plays a role not only in stress-related biological processes but also in the sugar-signalling pathway. Our survey provides additional annotation of the plant GST gene family and advance the understanding of plant GSTs in lineage-specific expansion and species diversification. |
format | Text |
id | pubmed-3041506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-30415062011-02-24 Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants Chi, Yunhua Cheng, Yansong Vanitha, Jeevanandam Kumar, Nadimuthu Ramamoorthy, Rengasamy Ramachandran, Srinivasan Jiang, Shu-Ye DNA Res Full Papers Glutathione S-transferases (GSTs) exist in various eukaryotes and function in detoxification of xenobiotics and in response to abiotic and biotic stresses. We have carried out a genome-wide survey of this gene family in 10 plant genomes. Our data show that tandem duplication has been regarded as the major expansion mechanism and both monocot and dicot plants may have practiced different expansion and evolutionary history. Non-synonymous substitutions per site (Ka) and synonymous substitutions per site (Ks) analyses showed that N- and C-terminal functional domains of GSTs (GST_N and GST_C) seem to have evolved under a strong purifying selection (Ka/Ks < 1) under different selective pressures. Differential evolutionary rates between GST_N and GST_C and high degree of expression divergence have been regarded as the major drivers for the retention of duplicated genes and the adaptability to various stresses. Expression profiling also indicated that the gene family plays a role not only in stress-related biological processes but also in the sugar-signalling pathway. Our survey provides additional annotation of the plant GST gene family and advance the understanding of plant GSTs in lineage-specific expansion and species diversification. Oxford University Press 2011-02 2010-12-17 /pmc/articles/PMC3041506/ /pubmed/21169340 http://dx.doi.org/10.1093/dnares/dsq031 Text en © The Author 2010. Published by Oxford University Press on behalf of Kazusa DNA Research Institute http://creativecommons.org/licenses/by-nc/2.5/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Full Papers Chi, Yunhua Cheng, Yansong Vanitha, Jeevanandam Kumar, Nadimuthu Ramamoorthy, Rengasamy Ramachandran, Srinivasan Jiang, Shu-Ye Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants |
title | Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants |
title_full | Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants |
title_fullStr | Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants |
title_full_unstemmed | Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants |
title_short | Expansion Mechanisms and Functional Divergence of the Glutathione S-Transferase Family in Sorghum and Other Higher Plants |
title_sort | expansion mechanisms and functional divergence of the glutathione s-transferase family in sorghum and other higher plants |
topic | Full Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041506/ https://www.ncbi.nlm.nih.gov/pubmed/21169340 http://dx.doi.org/10.1093/dnares/dsq031 |
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