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Ontology Mapping and Data Discovery for the Translational Investigator
An integrated data repository (IDR) containing aggregations of clinical, biomedical, economic, administrative, and public health data is a key component of an overall translational research infrastructure. But most available data repositories are designed using standard data warehouse architecture t...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
American Medical Informatics Association
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041530/ https://www.ncbi.nlm.nih.gov/pubmed/21347152 |
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author | Wynden, Rob Weiner, Mark G. Sim, Ida Gabriel, Davera Casale, Marco Carini, Simona Hastings, Shannon Ervin, David Tu, Samson Gennari, John H. Anderson, Nick Mobed, Ketty Lakshminarayanan, Prakash Massary, Maggie Cucina, Russ J. |
author_facet | Wynden, Rob Weiner, Mark G. Sim, Ida Gabriel, Davera Casale, Marco Carini, Simona Hastings, Shannon Ervin, David Tu, Samson Gennari, John H. Anderson, Nick Mobed, Ketty Lakshminarayanan, Prakash Massary, Maggie Cucina, Russ J. |
author_sort | Wynden, Rob |
collection | PubMed |
description | An integrated data repository (IDR) containing aggregations of clinical, biomedical, economic, administrative, and public health data is a key component of an overall translational research infrastructure. But most available data repositories are designed using standard data warehouse architecture that employs arbitrary data encoding standards, making queries across disparate repositories difficult. In response to these shortcomings we have designed a Health Ontology Mapper (HOM) that translates terminologies into formal data encoding standards without altering the underlying source data. We believe the HOM system promotes inter-institutional data sharing and research collaboration, and will ultimately lower the barrier to developing and using an IDR. |
format | Text |
id | pubmed-3041530 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | American Medical Informatics Association |
record_format | MEDLINE/PubMed |
spelling | pubmed-30415302011-02-23 Ontology Mapping and Data Discovery for the Translational Investigator Wynden, Rob Weiner, Mark G. Sim, Ida Gabriel, Davera Casale, Marco Carini, Simona Hastings, Shannon Ervin, David Tu, Samson Gennari, John H. Anderson, Nick Mobed, Ketty Lakshminarayanan, Prakash Massary, Maggie Cucina, Russ J. Summit on Translat Bioinforma Articles An integrated data repository (IDR) containing aggregations of clinical, biomedical, economic, administrative, and public health data is a key component of an overall translational research infrastructure. But most available data repositories are designed using standard data warehouse architecture that employs arbitrary data encoding standards, making queries across disparate repositories difficult. In response to these shortcomings we have designed a Health Ontology Mapper (HOM) that translates terminologies into formal data encoding standards without altering the underlying source data. We believe the HOM system promotes inter-institutional data sharing and research collaboration, and will ultimately lower the barrier to developing and using an IDR. American Medical Informatics Association 2010-03-01 /pmc/articles/PMC3041530/ /pubmed/21347152 Text en ©2010 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose |
spellingShingle | Articles Wynden, Rob Weiner, Mark G. Sim, Ida Gabriel, Davera Casale, Marco Carini, Simona Hastings, Shannon Ervin, David Tu, Samson Gennari, John H. Anderson, Nick Mobed, Ketty Lakshminarayanan, Prakash Massary, Maggie Cucina, Russ J. Ontology Mapping and Data Discovery for the Translational Investigator |
title | Ontology Mapping and Data Discovery for the Translational Investigator |
title_full | Ontology Mapping and Data Discovery for the Translational Investigator |
title_fullStr | Ontology Mapping and Data Discovery for the Translational Investigator |
title_full_unstemmed | Ontology Mapping and Data Discovery for the Translational Investigator |
title_short | Ontology Mapping and Data Discovery for the Translational Investigator |
title_sort | ontology mapping and data discovery for the translational investigator |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041530/ https://www.ncbi.nlm.nih.gov/pubmed/21347152 |
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