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Ontology Mapping and Data Discovery for the Translational Investigator

An integrated data repository (IDR) containing aggregations of clinical, biomedical, economic, administrative, and public health data is a key component of an overall translational research infrastructure. But most available data repositories are designed using standard data warehouse architecture t...

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Detalles Bibliográficos
Autores principales: Wynden, Rob, Weiner, Mark G., Sim, Ida, Gabriel, Davera, Casale, Marco, Carini, Simona, Hastings, Shannon, Ervin, David, Tu, Samson, Gennari, John H., Anderson, Nick, Mobed, Ketty, Lakshminarayanan, Prakash, Massary, Maggie, Cucina, Russ J.
Formato: Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041530/
https://www.ncbi.nlm.nih.gov/pubmed/21347152
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author Wynden, Rob
Weiner, Mark G.
Sim, Ida
Gabriel, Davera
Casale, Marco
Carini, Simona
Hastings, Shannon
Ervin, David
Tu, Samson
Gennari, John H.
Anderson, Nick
Mobed, Ketty
Lakshminarayanan, Prakash
Massary, Maggie
Cucina, Russ J.
author_facet Wynden, Rob
Weiner, Mark G.
Sim, Ida
Gabriel, Davera
Casale, Marco
Carini, Simona
Hastings, Shannon
Ervin, David
Tu, Samson
Gennari, John H.
Anderson, Nick
Mobed, Ketty
Lakshminarayanan, Prakash
Massary, Maggie
Cucina, Russ J.
author_sort Wynden, Rob
collection PubMed
description An integrated data repository (IDR) containing aggregations of clinical, biomedical, economic, administrative, and public health data is a key component of an overall translational research infrastructure. But most available data repositories are designed using standard data warehouse architecture that employs arbitrary data encoding standards, making queries across disparate repositories difficult. In response to these shortcomings we have designed a Health Ontology Mapper (HOM) that translates terminologies into formal data encoding standards without altering the underlying source data. We believe the HOM system promotes inter-institutional data sharing and research collaboration, and will ultimately lower the barrier to developing and using an IDR.
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spelling pubmed-30415302011-02-23 Ontology Mapping and Data Discovery for the Translational Investigator Wynden, Rob Weiner, Mark G. Sim, Ida Gabriel, Davera Casale, Marco Carini, Simona Hastings, Shannon Ervin, David Tu, Samson Gennari, John H. Anderson, Nick Mobed, Ketty Lakshminarayanan, Prakash Massary, Maggie Cucina, Russ J. Summit on Translat Bioinforma Articles An integrated data repository (IDR) containing aggregations of clinical, biomedical, economic, administrative, and public health data is a key component of an overall translational research infrastructure. But most available data repositories are designed using standard data warehouse architecture that employs arbitrary data encoding standards, making queries across disparate repositories difficult. In response to these shortcomings we have designed a Health Ontology Mapper (HOM) that translates terminologies into formal data encoding standards without altering the underlying source data. We believe the HOM system promotes inter-institutional data sharing and research collaboration, and will ultimately lower the barrier to developing and using an IDR. American Medical Informatics Association 2010-03-01 /pmc/articles/PMC3041530/ /pubmed/21347152 Text en ©2010 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Wynden, Rob
Weiner, Mark G.
Sim, Ida
Gabriel, Davera
Casale, Marco
Carini, Simona
Hastings, Shannon
Ervin, David
Tu, Samson
Gennari, John H.
Anderson, Nick
Mobed, Ketty
Lakshminarayanan, Prakash
Massary, Maggie
Cucina, Russ J.
Ontology Mapping and Data Discovery for the Translational Investigator
title Ontology Mapping and Data Discovery for the Translational Investigator
title_full Ontology Mapping and Data Discovery for the Translational Investigator
title_fullStr Ontology Mapping and Data Discovery for the Translational Investigator
title_full_unstemmed Ontology Mapping and Data Discovery for the Translational Investigator
title_short Ontology Mapping and Data Discovery for the Translational Investigator
title_sort ontology mapping and data discovery for the translational investigator
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041530/
https://www.ncbi.nlm.nih.gov/pubmed/21347152
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