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Towards Interoperable Reporting Standards for Omics Data: Hopes and Hurdles

BACKGROUND: As the size and complexity of scientific datasets and the corresponding information stores grow, standards for collecting, describing, formatting, submitting and exchanging information are playing an increasingly active role. Several initiatives occupy strategic positions in the internat...

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Detalles Bibliográficos
Autores principales: Sansone, Susanna-Assunta, Rocca-Serra, Philippe, Field, Dawn, Taylor, Chris F, Tong, Weida, Brandizi, Marco, Maguire, Eamonn, Sklyar, Nataliya
Formato: Texto
Lenguaje:English
Publicado: American Medical Informatics Association 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041584/
https://www.ncbi.nlm.nih.gov/pubmed/21347181
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author Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Field, Dawn
Taylor, Chris F
Tong, Weida
Brandizi, Marco
Maguire, Eamonn
Sklyar, Nataliya
author_facet Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Field, Dawn
Taylor, Chris F
Tong, Weida
Brandizi, Marco
Maguire, Eamonn
Sklyar, Nataliya
author_sort Sansone, Susanna-Assunta
collection PubMed
description BACKGROUND: As the size and complexity of scientific datasets and the corresponding information stores grow, standards for collecting, describing, formatting, submitting and exchanging information are playing an increasingly active role. Several initiatives occupy strategic positions in the international scenario, both within and across domains. However, the job of harmonising reporting standards is still very much a work in progress; both software interoperability and the data integration remain challenging as things stand. RESULTS: The status quo with respect to standardization initiatives is summarized here, with particular emphasis on the motivation for, and the challenges of, ongoing synergistic activities amongst the academic community focused on the creation of truly interoperable standards. CONCLUSIONS: Groups generating standards should engage with ongoing cross-domain activities to simplify the integration of heterogeneous data sets to the greatest possible extent.
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spelling pubmed-30415842011-02-23 Towards Interoperable Reporting Standards for Omics Data: Hopes and Hurdles Sansone, Susanna-Assunta Rocca-Serra, Philippe Field, Dawn Taylor, Chris F Tong, Weida Brandizi, Marco Maguire, Eamonn Sklyar, Nataliya Summit on Translat Bioinforma Articles BACKGROUND: As the size and complexity of scientific datasets and the corresponding information stores grow, standards for collecting, describing, formatting, submitting and exchanging information are playing an increasingly active role. Several initiatives occupy strategic positions in the international scenario, both within and across domains. However, the job of harmonising reporting standards is still very much a work in progress; both software interoperability and the data integration remain challenging as things stand. RESULTS: The status quo with respect to standardization initiatives is summarized here, with particular emphasis on the motivation for, and the challenges of, ongoing synergistic activities amongst the academic community focused on the creation of truly interoperable standards. CONCLUSIONS: Groups generating standards should engage with ongoing cross-domain activities to simplify the integration of heterogeneous data sets to the greatest possible extent. American Medical Informatics Association 2009-03-01 /pmc/articles/PMC3041584/ /pubmed/21347181 Text en ©2009 AMIA - All rights reserved. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose
spellingShingle Articles
Sansone, Susanna-Assunta
Rocca-Serra, Philippe
Field, Dawn
Taylor, Chris F
Tong, Weida
Brandizi, Marco
Maguire, Eamonn
Sklyar, Nataliya
Towards Interoperable Reporting Standards for Omics Data: Hopes and Hurdles
title Towards Interoperable Reporting Standards for Omics Data: Hopes and Hurdles
title_full Towards Interoperable Reporting Standards for Omics Data: Hopes and Hurdles
title_fullStr Towards Interoperable Reporting Standards for Omics Data: Hopes and Hurdles
title_full_unstemmed Towards Interoperable Reporting Standards for Omics Data: Hopes and Hurdles
title_short Towards Interoperable Reporting Standards for Omics Data: Hopes and Hurdles
title_sort towards interoperable reporting standards for omics data: hopes and hurdles
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041584/
https://www.ncbi.nlm.nih.gov/pubmed/21347181
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