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VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

BACKGROUND: Visualization of orthogonal (disjoint) or overlapping datasets is a common task in bioinformatics. Few tools exist to automate the generation of extensively-customizable, high-resolution Venn and Euler diagrams in the R statistical environment. To fill this gap we introduce VennDiagram,...

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Detalles Bibliográficos
Autores principales: Chen, Hanbo, Boutros, Paul C
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041657/
https://www.ncbi.nlm.nih.gov/pubmed/21269502
http://dx.doi.org/10.1186/1471-2105-12-35
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author Chen, Hanbo
Boutros, Paul C
author_facet Chen, Hanbo
Boutros, Paul C
author_sort Chen, Hanbo
collection PubMed
description BACKGROUND: Visualization of orthogonal (disjoint) or overlapping datasets is a common task in bioinformatics. Few tools exist to automate the generation of extensively-customizable, high-resolution Venn and Euler diagrams in the R statistical environment. To fill this gap we introduce VennDiagram, an R package that enables the automated generation of highly-customizable, high-resolution Venn diagrams with up to four sets and Euler diagrams with up to three sets. RESULTS: The VennDiagram package offers the user the ability to customize essentially all aspects of the generated diagrams, including font sizes, label styles and locations, and the overall rotation of the diagram. We have implemented scaled Venn and Euler diagrams, which increase graphical accuracy and visual appeal. Diagrams are generated as high-definition TIFF files, simplifying the process of creating publication-quality figures and easing integration with established analysis pipelines. CONCLUSIONS: The VennDiagram package allows the creation of high quality Venn and Euler diagrams in the R statistical environment.
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spelling pubmed-30416572011-02-19 VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R Chen, Hanbo Boutros, Paul C BMC Bioinformatics Software BACKGROUND: Visualization of orthogonal (disjoint) or overlapping datasets is a common task in bioinformatics. Few tools exist to automate the generation of extensively-customizable, high-resolution Venn and Euler diagrams in the R statistical environment. To fill this gap we introduce VennDiagram, an R package that enables the automated generation of highly-customizable, high-resolution Venn diagrams with up to four sets and Euler diagrams with up to three sets. RESULTS: The VennDiagram package offers the user the ability to customize essentially all aspects of the generated diagrams, including font sizes, label styles and locations, and the overall rotation of the diagram. We have implemented scaled Venn and Euler diagrams, which increase graphical accuracy and visual appeal. Diagrams are generated as high-definition TIFF files, simplifying the process of creating publication-quality figures and easing integration with established analysis pipelines. CONCLUSIONS: The VennDiagram package allows the creation of high quality Venn and Euler diagrams in the R statistical environment. BioMed Central 2011-01-26 /pmc/articles/PMC3041657/ /pubmed/21269502 http://dx.doi.org/10.1186/1471-2105-12-35 Text en Copyright © 2011 Chen and Boutros; licensee BioMed Central Ltd. https://creativecommons.org/licenses/by/2.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0 (https://creativecommons.org/licenses/by/2.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software
Chen, Hanbo
Boutros, Paul C
VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
title VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
title_full VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
title_fullStr VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
title_full_unstemmed VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
title_short VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R
title_sort venndiagram: a package for the generation of highly-customizable venn and euler diagrams in r
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041657/
https://www.ncbi.nlm.nih.gov/pubmed/21269502
http://dx.doi.org/10.1186/1471-2105-12-35
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