MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets

Summary: MADGene is a software environment comprising a web-based database and a java application. This platform aims at unifying gene identifiers (ids) and performing gene set analysis. MADGene allows the user to perform inter-conversion of clone and gene ids over a large range of nomenclatures rel...

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Detalles Bibliográficos
Autores principales: Baron, Daniel, Bihouée, Audrey, Teusan, Raluca, Dubois, Emeric, Savagner, Frédérique, Steenman, Marja, Houlgatte, Rémi, Ramstein, Gérard
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3042180/
https://www.ncbi.nlm.nih.gov/pubmed/21216776
http://dx.doi.org/10.1093/bioinformatics/btq710
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author Baron, Daniel
Bihouée, Audrey
Teusan, Raluca
Dubois, Emeric
Savagner, Frédérique
Steenman, Marja
Houlgatte, Rémi
Ramstein, Gérard
author_facet Baron, Daniel
Bihouée, Audrey
Teusan, Raluca
Dubois, Emeric
Savagner, Frédérique
Steenman, Marja
Houlgatte, Rémi
Ramstein, Gérard
author_sort Baron, Daniel
collection PubMed
description Summary: MADGene is a software environment comprising a web-based database and a java application. This platform aims at unifying gene identifiers (ids) and performing gene set analysis. MADGene allows the user to perform inter-conversion of clone and gene ids over a large range of nomenclatures relative to 17 species. We propose a set of 23 functions to facilitate the analysis of gene sets and we give two microarray applications to show how MADGene can be used to conduct meta-analyses. Availability: The MADGene resources are freely available online from http://www.madtools.org, a website dedicated to the analysis and annotation of DNA microarray data. Contact: gerard.ramstein@univ-nantes.fr Supplementary information: Supplementary data are available at Bioinformatics online.
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spelling pubmed-30421802011-02-24 MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets Baron, Daniel Bihouée, Audrey Teusan, Raluca Dubois, Emeric Savagner, Frédérique Steenman, Marja Houlgatte, Rémi Ramstein, Gérard Bioinformatics Applications Note Summary: MADGene is a software environment comprising a web-based database and a java application. This platform aims at unifying gene identifiers (ids) and performing gene set analysis. MADGene allows the user to perform inter-conversion of clone and gene ids over a large range of nomenclatures relative to 17 species. We propose a set of 23 functions to facilitate the analysis of gene sets and we give two microarray applications to show how MADGene can be used to conduct meta-analyses. Availability: The MADGene resources are freely available online from http://www.madtools.org, a website dedicated to the analysis and annotation of DNA microarray data. Contact: gerard.ramstein@univ-nantes.fr Supplementary information: Supplementary data are available at Bioinformatics online. Oxford University Press 2011-03-01 2011-01-06 /pmc/articles/PMC3042180/ /pubmed/21216776 http://dx.doi.org/10.1093/bioinformatics/btq710 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Baron, Daniel
Bihouée, Audrey
Teusan, Raluca
Dubois, Emeric
Savagner, Frédérique
Steenman, Marja
Houlgatte, Rémi
Ramstein, Gérard
MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
title MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
title_full MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
title_fullStr MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
title_full_unstemmed MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
title_short MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
title_sort madgene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3042180/
https://www.ncbi.nlm.nih.gov/pubmed/21216776
http://dx.doi.org/10.1093/bioinformatics/btq710
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