SeqMaT: A sequence manipulation tool for phylogenetic analysis

1. data format conversion, 2. sequence name coding and decoding, 3. redundant and highly similar sequence removal, and 4. data mining utilities. SeqMaT was developed using Java with two versions, web-based and standalone. A standalone program is convenient to manipulate a large number of sequences,...

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Detalles Bibliográficos
Autores principales: Attaluri, Pavan Kumar, Christman, Mary C, Chen, Zhengxin, Lu, Guoqing
Formato: Texto
Lenguaje:English
Publicado: Biomedical Informatics 2011
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044431/
https://www.ncbi.nlm.nih.gov/pubmed/21383910
Descripción
Sumario:1. data format conversion, 2. sequence name coding and decoding, 3. redundant and highly similar sequence removal, and 4. data mining utilities. SeqMaT was developed using Java with two versions, web-based and standalone. A standalone program is convenient to manipulate a large number of sequences, while the web version will guarantee wide availability of the tool for researchers and practitioners throughout the Internet. AVAILABILITY: The database is available for free at http://glee.ist.unomaha.edu/seqmat

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