SeqMaT: A sequence manipulation tool for phylogenetic analysis

1. data format conversion, 2. sequence name coding and decoding, 3. redundant and highly similar sequence removal, and 4. data mining utilities. SeqMaT was developed using Java with two versions, web-based and standalone. A standalone program is convenient to manipulate a large number of sequences,...

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Detalles Bibliográficos
Autores principales: Attaluri, Pavan Kumar, Christman, Mary C, Chen, Zhengxin, Lu, Guoqing
Formato: Texto
Lenguaje:English
Publicado: Biomedical Informatics 2011
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044431/
https://www.ncbi.nlm.nih.gov/pubmed/21383910
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author Attaluri, Pavan Kumar
Christman, Mary C
Chen, Zhengxin
Lu, Guoqing
author_facet Attaluri, Pavan Kumar
Christman, Mary C
Chen, Zhengxin
Lu, Guoqing
author_sort Attaluri, Pavan Kumar
collection PubMed
description 1. data format conversion, 2. sequence name coding and decoding, 3. redundant and highly similar sequence removal, and 4. data mining utilities. SeqMaT was developed using Java with two versions, web-based and standalone. A standalone program is convenient to manipulate a large number of sequences, while the web version will guarantee wide availability of the tool for researchers and practitioners throughout the Internet. AVAILABILITY: The database is available for free at http://glee.ist.unomaha.edu/seqmat
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spelling pubmed-30444312011-03-07 SeqMaT: A sequence manipulation tool for phylogenetic analysis Attaluri, Pavan Kumar Christman, Mary C Chen, Zhengxin Lu, Guoqing Bioinformation Software 1. data format conversion, 2. sequence name coding and decoding, 3. redundant and highly similar sequence removal, and 4. data mining utilities. SeqMaT was developed using Java with two versions, web-based and standalone. A standalone program is convenient to manipulate a large number of sequences, while the web version will guarantee wide availability of the tool for researchers and practitioners throughout the Internet. AVAILABILITY: The database is available for free at http://glee.ist.unomaha.edu/seqmat Biomedical Informatics 2011-02-07 /pmc/articles/PMC3044431/ /pubmed/21383910 Text en © 2011 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Software
Attaluri, Pavan Kumar
Christman, Mary C
Chen, Zhengxin
Lu, Guoqing
SeqMaT: A sequence manipulation tool for phylogenetic analysis
title SeqMaT: A sequence manipulation tool for phylogenetic analysis
title_full SeqMaT: A sequence manipulation tool for phylogenetic analysis
title_fullStr SeqMaT: A sequence manipulation tool for phylogenetic analysis
title_full_unstemmed SeqMaT: A sequence manipulation tool for phylogenetic analysis
title_short SeqMaT: A sequence manipulation tool for phylogenetic analysis
title_sort seqmat: a sequence manipulation tool for phylogenetic analysis
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3044431/
https://www.ncbi.nlm.nih.gov/pubmed/21383910
work_keys_str_mv AT attaluripavankumar seqmatasequencemanipulationtoolforphylogeneticanalysis
AT christmanmaryc seqmatasequencemanipulationtoolforphylogeneticanalysis
AT chenzhengxin seqmatasequencemanipulationtoolforphylogeneticanalysis
AT luguoqing seqmatasequencemanipulationtoolforphylogeneticanalysis

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