A pipeline for RNA-seq data processing and quality assessment

Summary: We present an R based pipeline, ArrayExpressHTS, for pre-processing, expression estimation and data quality assessment of high-throughput sequencing transcriptional profiling (RNA-seq) datasets. The pipeline starts from raw sequence files and produces standard Bioconductor R objects contain...

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Detalles Bibliográficos
Autores principales: Goncalves, Angela, Tikhonov, Andrew, Brazma, Alvis, Kapushesky, Misha
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051320/
https://www.ncbi.nlm.nih.gov/pubmed/21233166
http://dx.doi.org/10.1093/bioinformatics/btr012

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051320/
https://www.ncbi.nlm.nih.gov/pubmed/21233166
http://dx.doi.org/10.1093/bioinformatics/btr012

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