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Dalliance: interactive genome viewing on the web

Summary: Dalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data. Availability and Implementation...

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Detalles Bibliográficos
Autores principales: Down, Thomas A., Piipari, Matias, Hubbard, Tim J. P.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051325/
https://www.ncbi.nlm.nih.gov/pubmed/21252075
http://dx.doi.org/10.1093/bioinformatics/btr020
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author Down, Thomas A.
Piipari, Matias
Hubbard, Tim J. P.
author_facet Down, Thomas A.
Piipari, Matias
Hubbard, Tim J. P.
author_sort Down, Thomas A.
collection PubMed
description Summary: Dalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data. Availability and Implementation: Dalliance runs entirely within your web browser, and relies on existing DAS server infrastructure. Browsers for several mammalian genomes are available at http://www.biodalliance.org/, and the use of DAS means you can add your own data to these browsers. In addition, the source code (Javascript) is available under the BSD license, and is straightforward to install on your own web server and embed within other documents. Contact: thomas@biodalliance.org
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spelling pubmed-30513252011-03-10 Dalliance: interactive genome viewing on the web Down, Thomas A. Piipari, Matias Hubbard, Tim J. P. Bioinformatics Applications Note Summary: Dalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data. Availability and Implementation: Dalliance runs entirely within your web browser, and relies on existing DAS server infrastructure. Browsers for several mammalian genomes are available at http://www.biodalliance.org/, and the use of DAS means you can add your own data to these browsers. In addition, the source code (Javascript) is available under the BSD license, and is straightforward to install on your own web server and embed within other documents. Contact: thomas@biodalliance.org Oxford University Press 2011-03-15 2011-01-19 /pmc/articles/PMC3051325/ /pubmed/21252075 http://dx.doi.org/10.1093/bioinformatics/btr020 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Down, Thomas A.
Piipari, Matias
Hubbard, Tim J. P.
Dalliance: interactive genome viewing on the web
title Dalliance: interactive genome viewing on the web
title_full Dalliance: interactive genome viewing on the web
title_fullStr Dalliance: interactive genome viewing on the web
title_full_unstemmed Dalliance: interactive genome viewing on the web
title_short Dalliance: interactive genome viewing on the web
title_sort dalliance: interactive genome viewing on the web
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051325/
https://www.ncbi.nlm.nih.gov/pubmed/21252075
http://dx.doi.org/10.1093/bioinformatics/btr020
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