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Dalliance: interactive genome viewing on the web
Summary: Dalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data. Availability and Implementation...
Autores principales: | , , |
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Formato: | Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051325/ https://www.ncbi.nlm.nih.gov/pubmed/21252075 http://dx.doi.org/10.1093/bioinformatics/btr020 |
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author | Down, Thomas A. Piipari, Matias Hubbard, Tim J. P. |
author_facet | Down, Thomas A. Piipari, Matias Hubbard, Tim J. P. |
author_sort | Down, Thomas A. |
collection | PubMed |
description | Summary: Dalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data. Availability and Implementation: Dalliance runs entirely within your web browser, and relies on existing DAS server infrastructure. Browsers for several mammalian genomes are available at http://www.biodalliance.org/, and the use of DAS means you can add your own data to these browsers. In addition, the source code (Javascript) is available under the BSD license, and is straightforward to install on your own web server and embed within other documents. Contact: thomas@biodalliance.org |
format | Text |
id | pubmed-3051325 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-30513252011-03-10 Dalliance: interactive genome viewing on the web Down, Thomas A. Piipari, Matias Hubbard, Tim J. P. Bioinformatics Applications Note Summary: Dalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data. Availability and Implementation: Dalliance runs entirely within your web browser, and relies on existing DAS server infrastructure. Browsers for several mammalian genomes are available at http://www.biodalliance.org/, and the use of DAS means you can add your own data to these browsers. In addition, the source code (Javascript) is available under the BSD license, and is straightforward to install on your own web server and embed within other documents. Contact: thomas@biodalliance.org Oxford University Press 2011-03-15 2011-01-19 /pmc/articles/PMC3051325/ /pubmed/21252075 http://dx.doi.org/10.1093/bioinformatics/btr020 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.0/uk/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Note Down, Thomas A. Piipari, Matias Hubbard, Tim J. P. Dalliance: interactive genome viewing on the web |
title | Dalliance: interactive genome viewing on the web |
title_full | Dalliance: interactive genome viewing on the web |
title_fullStr | Dalliance: interactive genome viewing on the web |
title_full_unstemmed | Dalliance: interactive genome viewing on the web |
title_short | Dalliance: interactive genome viewing on the web |
title_sort | dalliance: interactive genome viewing on the web |
topic | Applications Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3051325/ https://www.ncbi.nlm.nih.gov/pubmed/21252075 http://dx.doi.org/10.1093/bioinformatics/btr020 |
work_keys_str_mv | AT downthomasa dallianceinteractivegenomeviewingontheweb AT piiparimatias dallianceinteractivegenomeviewingontheweb AT hubbardtimjp dallianceinteractivegenomeviewingontheweb |