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Protonate3D: Assignment of ionization states and hydrogen coordinates to macromolecular structures

A new method, called Protonate3D, is presented for the automated prediction of hydrogen coordinates given the 3D coordinates of the heavy atoms of a macromolecular structure. Protonate3D considers side-chain “flip,” rotamer, tautomer, and ionization states of all chemical groups, ligands, and solven...

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Detalles Bibliográficos
Autor principal: Labute, Paul
Formato: Texto
Lenguaje:English
Publicado: Wiley Subscription Services, Inc., A Wiley Company 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3056144/
https://www.ncbi.nlm.nih.gov/pubmed/18814299
http://dx.doi.org/10.1002/prot.22234