Cargando…

Comparative analysis of copy number variation detection methods and database construction

BACKGROUND: Array-based detection of copy number variations (CNVs) is widely used for identifying disease-specific genetic variations. However, the accuracy of CNV detection is not sufficient and results differ depending on the detection programs used and their parameters. In this study, we evaluate...

Descripción completa

Detalles Bibliográficos
Autores principales:	Koike, Asako, Nishida, Nao, Yamashita, Daiki, Tokunaga, Katsushi
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3058066/ https://www.ncbi.nlm.nih.gov/pubmed/21385384 http://dx.doi.org/10.1186/1471-2156-12-29

Ejemplares similares

Genome-wide copy number variation analysis of hepatitis B infection in a Japanese population
por: Kikuchi, Masataka, et al.
Publicado: (2021)

Fuzzy methods for the detection of copy number variations in comparative genomic hybridization arrays
por: AlShibli, Ahmad, et al.
Publicado: (2020)

A remark on copy number variation detection methods
por: Li, Shuo, et al.
Publicado: (2018)

Evaluating the performance of Affymetrix SNP Array 6.0 platform with 400 Japanese individuals
por: Nishida, Nao, et al.
Publicado: (2008)

Comparative Studies of Copy Number Variation Detection Methods for Next-Generation Sequencing Technologies
por: Duan, Junbo, et al.
Publicado: (2013)

MSX2 copy number increase and craniosynostosis: copy number variation detected by array comparative genomic hybridization
por: de Oliveira Pelegrino, Karla, et al.
Publicado: (2012)

Copy-number-variation and copy-number-alteration region detection by cumulative plots
por: Li, Wentian, et al.
Publicado: (2009)

A crowdsourcing database for the copy-number variation of the Spanish population
por: López-López, Daniel, et al.
Publicado: (2023)

Single-cell copy number variation detection
por: Cheng, Jiqiu, et al.
Publicado: (2011)

Progress in Methods for Copy Number Variation Profiling
por: Gordeeva, Veronika, et al.
Publicado: (2022)

CNVVdb: a database of copy number variations across vertebrate genomes
por: Chen, Feng-Chi, et al.
Publicado: (2009)

Web-Based Database and Viewer of East Asian Copy Number Variations
por: Kim, Ji-Hong, et al.
Publicado: (2012)

Highly Parallel and Short-Acting Amplification with Locus-Specific Primers to Detect Single Nucleotide Polymorphisms by the DigiTag2 Assay
por: Nishida, Nao, et al.
Publicado: (2012)

A novel scatterplot-based method to detect copy number variation (CNV)
por: Qiao, Jia-Lu, et al.
Publicado: (2023)

Detection of copy number variations and their effects in Chinese bulls
por: Zhang, Liangzhi, et al.
Publicado: (2014)

Comprehensively benchmarking applications for detecting copy number variation
por: Zhang, Le, et al.
Publicado: (2019)

Detection of copy number variations in rice using array-based comparative genomic hybridization
por: Yu, Ping, et al.
Publicado: (2011)

Copy number variation (CNV) identification, interpretation, and database from Brazilian patients
por: de Godoy, Victória Cabral Silveira Monteiro, et al.
Publicado: (2020)

Comparative study of whole exome sequencing-based copy number variation detection tools
por: Zhao, Lanling, et al.
Publicado: (2020)

Noise cancellation using total variation for copy number variation detection
por: Zare, Fatima, et al.
Publicado: (2018)

Copy number variations and cancer
por: Shlien, Adam, et al.
Publicado: (2009)

Copy number variations and stroke
por: Colaianni, Valeria, et al.
Publicado: (2016)

Copy Number Variations and Schizophrenia
por: Szecówka, Kamila, et al.
Publicado: (2022)

Copy Number Variation and Osteoporosis
por: Lovšin, Nika
Publicado: (2023)

Genome-Wide Association Study Reveals Host Genetic Factors for Liver Diseases
por: Nishida, Nao, et al.
Publicado: (2013)

A computational method for detecting copy number variations using scale-space filtering
por: Lee, Jongkeun, et al.
Publicado: (2013)

CODEX: a normalization and copy number variation detection method for whole exome sequencing
por: Jiang, Yuchao, et al.
Publicado: (2015)

iCopyDAV: Integrated platform for copy number variations—Detection, annotation and visualization
por: Dharanipragada, Prashanthi, et al.
Publicado: (2018)

Clinically relevant copy number variations detected in cerebral palsy
por: Oskoui, Maryam, et al.
Publicado: (2015)

Family-Based Benchmarking of Copy Number Variation Detection Software
por: Nutsua, Marcel Elie, et al.
Publicado: (2015)

Detecting differential copy number variation between groups of samples
por: Lowe, Craig B., et al.
Publicado: (2018)

Correction: Comprehensively benchmarking applications for detecting copy number variation
por: Zhang, Le, et al.
Publicado: (2019)

SNP and gene networks construction and analysis from classification of copy number variations data
por: Liu, Yang, et al.
Publicado: (2011)

Analysis of copy number variations and possible candidate genes in spontaneous abortion by copy number variation sequencing
por: Bai, Wei, et al.
Publicado: (2023)

Copy number variations in Japanese children with autism spectrum disorder
por: Sakamoto, Yui, et al.
Publicado: (2021)

DECIPHER: database for the interpretation of phenotype-linked plausibly pathogenic sequence and copy-number variation
por: Bragin, Eugene, et al.
Publicado: (2014)

CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer
por: Chattopadhyay, Amrita, et al.
Publicado: (2021)

A custom ddPCR method for the detection of copy number variations in the nebulin triplicate region
por: Sagath, Lydia, et al.
Publicado: (2022)

Population Structure Shapes Copy Number Variation in Malaria Parasites
por: Cheeseman, Ian H., et al.
Publicado: (2016)

New Copy Number Variations in Schizophrenia
por: Magri, Chiara, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_cnpdk7qj5318qgu4ga8a70paep