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A Compact Statistical Model of the Song Syntax in Bengalese Finch
Songs of many songbird species consist of variable sequences of a finite number of syllables. A common approach for characterizing the syntax of these complex syllable sequences is to use transition probabilities between the syllables. This is equivalent to the Markov model, in which each syllable i...
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Formato: | Texto |
Lenguaje: | English |
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Public Library of Science
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060163/ https://www.ncbi.nlm.nih.gov/pubmed/21445230 http://dx.doi.org/10.1371/journal.pcbi.1001108 |
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author | Jin, Dezhe Z. Kozhevnikov, Alexay A. |
author_facet | Jin, Dezhe Z. Kozhevnikov, Alexay A. |
author_sort | Jin, Dezhe Z. |
collection | PubMed |
description | Songs of many songbird species consist of variable sequences of a finite number of syllables. A common approach for characterizing the syntax of these complex syllable sequences is to use transition probabilities between the syllables. This is equivalent to the Markov model, in which each syllable is associated with one state, and the transition probabilities between the states do not depend on the state transition history. Here we analyze the song syntax in Bengalese finch. We show that the Markov model fails to capture the statistical properties of the syllable sequences. Instead, a state transition model that accurately describes the statistics of the syllable sequences includes adaptation of the self-transition probabilities when states are revisited consecutively, and allows associations of more than one state to a given syllable. Such a model does not increase the model complexity significantly. Mathematically, the model is a partially observable Markov model with adaptation (POMMA). The success of the POMMA supports the branching chain network model of how syntax is controlled within the premotor song nucleus HVC, but also suggests that adaptation and many-to-one mapping from the syllable-encoding chain networks in HVC to syllables should be included in the network model. |
format | Text |
id | pubmed-3060163 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-30601632011-03-28 A Compact Statistical Model of the Song Syntax in Bengalese Finch Jin, Dezhe Z. Kozhevnikov, Alexay A. PLoS Comput Biol Research Article Songs of many songbird species consist of variable sequences of a finite number of syllables. A common approach for characterizing the syntax of these complex syllable sequences is to use transition probabilities between the syllables. This is equivalent to the Markov model, in which each syllable is associated with one state, and the transition probabilities between the states do not depend on the state transition history. Here we analyze the song syntax in Bengalese finch. We show that the Markov model fails to capture the statistical properties of the syllable sequences. Instead, a state transition model that accurately describes the statistics of the syllable sequences includes adaptation of the self-transition probabilities when states are revisited consecutively, and allows associations of more than one state to a given syllable. Such a model does not increase the model complexity significantly. Mathematically, the model is a partially observable Markov model with adaptation (POMMA). The success of the POMMA supports the branching chain network model of how syntax is controlled within the premotor song nucleus HVC, but also suggests that adaptation and many-to-one mapping from the syllable-encoding chain networks in HVC to syllables should be included in the network model. Public Library of Science 2011-03-17 /pmc/articles/PMC3060163/ /pubmed/21445230 http://dx.doi.org/10.1371/journal.pcbi.1001108 Text en Jin, Kozhevnikov. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Jin, Dezhe Z. Kozhevnikov, Alexay A. A Compact Statistical Model of the Song Syntax in Bengalese Finch |
title | A Compact Statistical Model of the Song Syntax in Bengalese Finch |
title_full | A Compact Statistical Model of the Song Syntax in Bengalese Finch |
title_fullStr | A Compact Statistical Model of the Song Syntax in Bengalese Finch |
title_full_unstemmed | A Compact Statistical Model of the Song Syntax in Bengalese Finch |
title_short | A Compact Statistical Model of the Song Syntax in Bengalese Finch |
title_sort | compact statistical model of the song syntax in bengalese finch |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3060163/ https://www.ncbi.nlm.nih.gov/pubmed/21445230 http://dx.doi.org/10.1371/journal.pcbi.1001108 |
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