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Estimates of nuclear DNA content in 98 species of brown algae (Phaeophyta)

BACKGROUND AND AIMS: Brown algae are critical components of marine ecosystems around the world. However, the genome of only one species of the class has so far been sequenced. This contrasts with numerous sequences available for model organisms such as higher plants, flies or worms. The present comm...

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Autores principales: Phillips, Naomi, Kapraun, Donald F., Gómez Garreta, Amelia, Ribera Siguan, M. Antonia, Rull, Jorde L., Salvador Soler, Noemi, Lewis, Raymond, Kawai, Hiroshi
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3064507/
https://www.ncbi.nlm.nih.gov/pubmed/22476472
http://dx.doi.org/10.1093/aobpla/plr001
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author Phillips, Naomi
Kapraun, Donald F.
Gómez Garreta, Amelia
Ribera Siguan, M. Antonia
Rull, Jorde L.
Salvador Soler, Noemi
Lewis, Raymond
Kawai, Hiroshi
author_facet Phillips, Naomi
Kapraun, Donald F.
Gómez Garreta, Amelia
Ribera Siguan, M. Antonia
Rull, Jorde L.
Salvador Soler, Noemi
Lewis, Raymond
Kawai, Hiroshi
author_sort Phillips, Naomi
collection PubMed
description BACKGROUND AND AIMS: Brown algae are critical components of marine ecosystems around the world. However, the genome of only one species of the class has so far been sequenced. This contrasts with numerous sequences available for model organisms such as higher plants, flies or worms. The present communication expands our coverage of DNA content information to 98 species of brown algae with a view to facilitating further genomic investigations of the class. METHODOLOGY: The DNA-localizing fluorochrome DAPI (4′,6-diamidino-2-phenylindole) and the red blood cell (chicken erythrocyte) standard were used to estimate 2C values by static microspectrophotometry. PRINCIPAL RESULTS: 2C DNA contents are reported for 98 species of brown algae, almost doubling the number of estimates available for the class. The present results also expand the reported DNA content range to 0.2–3.6 pg, with several species of Fucales and Laminariales containing apparent polyploid genomes with 2C = 1.8–3.6 pg. CONCLUSIONS: The data provide DNA content values for 12 of the 19 recognized orders of brown algae spanning the breadth of the class. Despite earlier contentions concerning DNA content and the presence of oogamy, the present results do not support a correlation between phylogenetic placement and genome size. The closest sister groups to the brown algae have genome sizes on the order of 0.3 pg (e.g. Schizocladiophyceae), suggesting that this may be the ancestral genome size. However, DNA content ranges widely across the class.
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spelling pubmed-30645072011-03-28 Estimates of nuclear DNA content in 98 species of brown algae (Phaeophyta) Phillips, Naomi Kapraun, Donald F. Gómez Garreta, Amelia Ribera Siguan, M. Antonia Rull, Jorde L. Salvador Soler, Noemi Lewis, Raymond Kawai, Hiroshi AoB Plants Research Article BACKGROUND AND AIMS: Brown algae are critical components of marine ecosystems around the world. However, the genome of only one species of the class has so far been sequenced. This contrasts with numerous sequences available for model organisms such as higher plants, flies or worms. The present communication expands our coverage of DNA content information to 98 species of brown algae with a view to facilitating further genomic investigations of the class. METHODOLOGY: The DNA-localizing fluorochrome DAPI (4′,6-diamidino-2-phenylindole) and the red blood cell (chicken erythrocyte) standard were used to estimate 2C values by static microspectrophotometry. PRINCIPAL RESULTS: 2C DNA contents are reported for 98 species of brown algae, almost doubling the number of estimates available for the class. The present results also expand the reported DNA content range to 0.2–3.6 pg, with several species of Fucales and Laminariales containing apparent polyploid genomes with 2C = 1.8–3.6 pg. CONCLUSIONS: The data provide DNA content values for 12 of the 19 recognized orders of brown algae spanning the breadth of the class. Despite earlier contentions concerning DNA content and the presence of oogamy, the present results do not support a correlation between phylogenetic placement and genome size. The closest sister groups to the brown algae have genome sizes on the order of 0.3 pg (e.g. Schizocladiophyceae), suggesting that this may be the ancestral genome size. However, DNA content ranges widely across the class. Oxford University Press 2011 2011-01-18 /pmc/articles/PMC3064507/ /pubmed/22476472 http://dx.doi.org/10.1093/aobpla/plr001 Text en © The Authors 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5/ Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Phillips, Naomi
Kapraun, Donald F.
Gómez Garreta, Amelia
Ribera Siguan, M. Antonia
Rull, Jorde L.
Salvador Soler, Noemi
Lewis, Raymond
Kawai, Hiroshi
Estimates of nuclear DNA content in 98 species of brown algae (Phaeophyta)
title Estimates of nuclear DNA content in 98 species of brown algae (Phaeophyta)
title_full Estimates of nuclear DNA content in 98 species of brown algae (Phaeophyta)
title_fullStr Estimates of nuclear DNA content in 98 species of brown algae (Phaeophyta)
title_full_unstemmed Estimates of nuclear DNA content in 98 species of brown algae (Phaeophyta)
title_short Estimates of nuclear DNA content in 98 species of brown algae (Phaeophyta)
title_sort estimates of nuclear dna content in 98 species of brown algae (phaeophyta)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3064507/
https://www.ncbi.nlm.nih.gov/pubmed/22476472
http://dx.doi.org/10.1093/aobpla/plr001
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