ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins

Summary: We describe here the ncIDP-assign extension for the popular NMR assignment program SPARKY, which aids in the sequence-specific resonance assignment of intrinsically disordered proteins (IDPs). The assignment plugin greatly facilitates the effective matching of a set of connected resonances...

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Detalles Bibliográficos
Autores principales: Tamiola, Kamil, Mulder, Frans A. A.
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065690/
https://www.ncbi.nlm.nih.gov/pubmed/21372082
http://dx.doi.org/10.1093/bioinformatics/btr054
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author Tamiola, Kamil
Mulder, Frans A. A.
author_facet Tamiola, Kamil
Mulder, Frans A. A.
author_sort Tamiola, Kamil
collection PubMed
description Summary: We describe here the ncIDP-assign extension for the popular NMR assignment program SPARKY, which aids in the sequence-specific resonance assignment of intrinsically disordered proteins (IDPs). The assignment plugin greatly facilitates the effective matching of a set of connected resonances to the correct position in the sequence by making use of IDP random coil chemical shifts. Availability: The ncIDP-assign extension is available at http://www.protein-nmr.org/. Contact: k.tamiola@rug.nl; f.a.a.mulder@rug.nl; support@protein-nmr.org
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spelling pubmed-30656902011-03-30 ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins Tamiola, Kamil Mulder, Frans A. A. Bioinformatics Applications Note Summary: We describe here the ncIDP-assign extension for the popular NMR assignment program SPARKY, which aids in the sequence-specific resonance assignment of intrinsically disordered proteins (IDPs). The assignment plugin greatly facilitates the effective matching of a set of connected resonances to the correct position in the sequence by making use of IDP random coil chemical shifts. Availability: The ncIDP-assign extension is available at http://www.protein-nmr.org/. Contact: k.tamiola@rug.nl; f.a.a.mulder@rug.nl; support@protein-nmr.org Oxford University Press 2011-04-01 2011-03-03 /pmc/articles/PMC3065690/ /pubmed/21372082 http://dx.doi.org/10.1093/bioinformatics/btr054 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Tamiola, Kamil
Mulder, Frans A. A.
ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
title ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
title_full ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
title_fullStr ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
title_full_unstemmed ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
title_short ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
title_sort ncidp-assign: a sparky extension for the effective nmr assignment of intrinsically disordered proteins
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065690/
https://www.ncbi.nlm.nih.gov/pubmed/21372082
http://dx.doi.org/10.1093/bioinformatics/btr054
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AT mulderfransaa ncidpassignasparkyextensionfortheeffectivenmrassignmentofintrinsicallydisorderedproteins

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