Cargando…

iLoc-Euk: A Multi-Label Classifier for Predicting the Subcellular Localization of Singleplex and Multiplex Eukaryotic Proteins

Predicting protein subcellular localization is an important and difficult problem, particularly when query proteins may have the multiplex character, i.e., simultaneously exist at, or move between, two or more different subcellular location sites. Most of the existing protein subcellular location pr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chou, Kuo-Chen, Wu, Zhi-Cheng, Xiao, Xuan
Formato:	Texto
Lenguaje:	English
Publicado:	Public Library of Science 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3068162/ https://www.ncbi.nlm.nih.gov/pubmed/21483473 http://dx.doi.org/10.1371/journal.pone.0018258

Ejemplares similares

A Multi-Label Predictor for Identifying the Subcellular Locations of Singleplex and Multiplex Eukaryotic Proteins
por: Wang, Xiao, et al.
Publicado: (2012)

A New Method for Predicting the Subcellular Localization of Eukaryotic Proteins with Both Single and Multiple Sites: Euk-mPLoc 2.0
por: Chou, Kuo-Chen, et al.
Publicado: (2010)

ngLOC: software and web server for predicting protein subcellular localization in prokaryotes and eukaryotes
por: King, Brian R, et al.
Publicado: (2012)

A Multi-Label Classifier for Predicting the Subcellular Localization of Gram-Negative Bacterial Proteins with Both Single and Multiple Sites
por: Xiao, Xuan, et al.
Publicado: (2011)

DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
por: Thumuluri, Vineet, et al.
Publicado: (2022)

Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC
por: Saary, Paul, et al.
Publicado: (2020)

ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes
por: King, Brian R, et al.
Publicado: (2007)

Differential Requirements of Singleplex and Multiplex Recombineering of Large DNA Constructs
por: Reddy, Thimma R., et al.
Publicado: (2015)

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution
por: del Campo, Javier, et al.
Publicado: (2018)

PSO-LocBact: A Consensus Method for Optimizing Multiple Classifier Results for Predicting the Subcellular Localization of Bacterial Proteins
por: Lertampaiporn, Supatcha, et al.
Publicado: (2019)

Comparison of molecular and extract-based allergy diagnostics with multiplex and singleplex analysis
por: Huss-Marp, Johannes, et al.
Publicado: (2015)

MetaEuk—sensitive, high-throughput gene discovery, and annotation for large-scale eukaryotic metagenomics
por: Levy Karin, Eli, et al.
Publicado: (2020)

Human Protein Subcellular Localization with Integrated Source and Multi-label Ensemble Classifier
por: Guo, Xiaotong, et al.
Publicado: (2016)

DM3Loc: multi-label mRNA subcellular localization prediction and analysis based on multi-head self-attention mechanism
por: Wang, Duolin, et al.
Publicado: (2021)

MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction
por: Blum, Torsten, et al.
Publicado: (2009)

MirLocPredictor: A ConvNet-Based Multi-Label MicroRNA Subcellular Localization Predictor by Incorporating k-Mer Positional Information
por: Asim, Muhammad Nabeel, et al.
Publicado: (2020)

HybridGO-Loc: Mining Hybrid Features on Gene Ontology for Predicting Subcellular Localization of Multi-Location Proteins
por: Wan, Shibiao, et al.
Publicado: (2014)

PlantLoc: an accurate web server for predicting plant protein subcellular localization by substantiality motif
por: Tang, Shengnan, et al.
Publicado: (2013)

eSLDB: eukaryotic subcellular localization database
por: Pierleoni, Andea, et al.
Publicado: (2007)

Clinical utility of immunological methods based on the singleplex and multiplex ImmunoCap systems for diagnosis of shrimp allergy
por: Ukleja-Sokołowska, Natalia, et al.
Publicado: (2021)

UniEuk: Time to Speak a Common Language in Protistology!
por: Berney, Cédric, et al.
Publicado: (2017)

ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
por: Huang, Wen-Lin, et al.
Publicado: (2008)

GM-lncLoc: LncRNAs subcellular localization prediction based on graph neural network with meta-learning
por: Cai, Junzhe, et al.
Publicado: (2023)

Analytical Sensitivity Comparison between Singleplex Real-Time PCR and a Multiplex PCR Platform for Detecting Respiratory Viruses
por: Parker, Jayme, et al.
Publicado: (2015)

Universal detection of phytoplasmas and Xylella spp. by TaqMan singleplex and multiplex real-time PCR with dual priming oligonucleotides
por: Ito, Takao, et al.
Publicado: (2017)

Optimisation of robust singleplex and multiplex droplet digital PCR assays for high confidence mutation detection in circulating tumour DNA
por: Rowlands, Vicky, et al.
Publicado: (2019)

IgE multiplex testing in house dust mite allergy is utile, and sensitivity is comparable to extract‐based singleplex testing
por: Koch, Lukas, et al.
Publicado: (2020)

Multi-location gram-positive and gram-negative bacterial protein subcellular localization using gene ontology and multi-label classifier ensemble
por: Wang, Xiao, et al.
Publicado: (2015)

Correction: Analytical Sensitivity Comparison between Singleplex Real-Time PCR and a Multiplex PCR Platform for Detecting Respiratory Viruses
por: Parker, Jayme, et al.
Publicado: (2018)

Endpoint PCR coupled with capillary electrophoresis (celPCR) provides sensitive and quantitative measures of environmental DNA in singleplex and multiplex reactions
por: Thalinger, Bettina, et al.
Publicado: (2021)

Preservation of Renal Blood Flow by the Antioxidant EUK-134 in LPS-Treated Pigs
por: Magder, Sheldon, et al.
Publicado: (2015)

EukRef-excavates: seven curated SSU ribosomal RNA gene databases
por: Kolisko, Martin, et al.
Publicado: (2020)

TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization
por: Ambrosio, Frank J., et al.
Publicado: (2023)

LocTree3 prediction of localization
por: Goldberg, Tatyana, et al.
Publicado: (2014)

ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins
por: Garg, Aarti, et al.
Publicado: (2008)

Empirical evaluation of humpback whale telomere length estimates; quality control and factors causing variability in the singleplex and multiplex qPCR methods
por: Olsen, Morten Tange, et al.
Publicado: (2012)

Singleplex, multiplex and pooled sample real-time RT-PCR assays for detection of SARS-CoV-2 in an occupational medicine setting
por: Butler, Kimberly S., et al.
Publicado: (2022)

An Ensemble Classifier for Eukaryotic Protein Subcellular Location Prediction Using Gene Ontology Categories and Amino Acid Hydrophobicity
por: Li, Liqi, et al.
Publicado: (2012)

Ensemble of Multiple Classifiers for Multilabel Classification of Plant Protein Subcellular Localization
por: Wattanapornprom, Warin, et al.
Publicado: (2021)

Effects of electrotactic exercise and antioxidant EUK-134 on oxidative stress relief in Caenorhabditis elegans
por: Pham, Thi Thanh Huong, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_99m6rnelmsh6tc6j03jc0u3r6d