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The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory

The techniques used in protein production and structural biology have been developing rapidly, but techniques for recording the laboratory information produced have not kept pace. One approach is the development of laboratory information-management systems (LIMS), which typically use a relational da...

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Autores principales: Morris, Chris, Pajon, Anne, Griffiths, Susanne L., Daniel, Ed, Savitsky, Marc, Lin, Bill, Diprose, Jonathan M., Wilter da Silva, Alan, Pilicheva, Katya, Troshin, Peter, van Niekerk, Johannes, Isaacs, Neil, Naismith, James, Nave, Colin, Blake, Richard, Wilson, Keith S., Stuart, David I., Henrick, Kim, Esnouf, Robert M.
Formato: Texto
Lenguaje:English
Publicado: International Union of Crystallography 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3069740/
https://www.ncbi.nlm.nih.gov/pubmed/21460443
http://dx.doi.org/10.1107/S0907444911007943
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author Morris, Chris
Pajon, Anne
Griffiths, Susanne L.
Daniel, Ed
Savitsky, Marc
Lin, Bill
Diprose, Jonathan M.
Wilter da Silva, Alan
Pilicheva, Katya
Troshin, Peter
van Niekerk, Johannes
Isaacs, Neil
Naismith, James
Nave, Colin
Blake, Richard
Wilson, Keith S.
Stuart, David I.
Henrick, Kim
Esnouf, Robert M.
author_facet Morris, Chris
Pajon, Anne
Griffiths, Susanne L.
Daniel, Ed
Savitsky, Marc
Lin, Bill
Diprose, Jonathan M.
Wilter da Silva, Alan
Pilicheva, Katya
Troshin, Peter
van Niekerk, Johannes
Isaacs, Neil
Naismith, James
Nave, Colin
Blake, Richard
Wilson, Keith S.
Stuart, David I.
Henrick, Kim
Esnouf, Robert M.
author_sort Morris, Chris
collection PubMed
description The techniques used in protein production and structural biology have been developing rapidly, but techniques for recording the laboratory information produced have not kept pace. One approach is the development of laboratory information-management systems (LIMS), which typically use a relational database schema to model and store results from a laboratory workflow. The underlying philosophy and implementation of the Protein Information Management System (PiMS), a LIMS development specifically targeted at the flexible and unpredictable workflows of protein-production research laboratories of all scales, is described. PiMS is a web-based Java application that uses either Postgres or Oracle as the underlying relational database-management system. PiMS is available under a free licence to all academic laboratories either for local installation or for use as a managed service.
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spelling pubmed-30697402011-04-07 The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory Morris, Chris Pajon, Anne Griffiths, Susanne L. Daniel, Ed Savitsky, Marc Lin, Bill Diprose, Jonathan M. Wilter da Silva, Alan Pilicheva, Katya Troshin, Peter van Niekerk, Johannes Isaacs, Neil Naismith, James Nave, Colin Blake, Richard Wilson, Keith S. Stuart, David I. Henrick, Kim Esnouf, Robert M. Acta Crystallogr D Biol Crystallogr Research Papers The techniques used in protein production and structural biology have been developing rapidly, but techniques for recording the laboratory information produced have not kept pace. One approach is the development of laboratory information-management systems (LIMS), which typically use a relational database schema to model and store results from a laboratory workflow. The underlying philosophy and implementation of the Protein Information Management System (PiMS), a LIMS development specifically targeted at the flexible and unpredictable workflows of protein-production research laboratories of all scales, is described. PiMS is a web-based Java application that uses either Postgres or Oracle as the underlying relational database-management system. PiMS is available under a free licence to all academic laboratories either for local installation or for use as a managed service. International Union of Crystallography 2011-04-01 2011-03-18 /pmc/articles/PMC3069740/ /pubmed/21460443 http://dx.doi.org/10.1107/S0907444911007943 Text en © Morris et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Morris, Chris
Pajon, Anne
Griffiths, Susanne L.
Daniel, Ed
Savitsky, Marc
Lin, Bill
Diprose, Jonathan M.
Wilter da Silva, Alan
Pilicheva, Katya
Troshin, Peter
van Niekerk, Johannes
Isaacs, Neil
Naismith, James
Nave, Colin
Blake, Richard
Wilson, Keith S.
Stuart, David I.
Henrick, Kim
Esnouf, Robert M.
The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory
title The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory
title_full The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory
title_fullStr The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory
title_full_unstemmed The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory
title_short The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory
title_sort protein information management system (pims): a generic tool for any structural biology research laboratory
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3069740/
https://www.ncbi.nlm.nih.gov/pubmed/21460443
http://dx.doi.org/10.1107/S0907444911007943
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