Cargando…
The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory
The techniques used in protein production and structural biology have been developing rapidly, but techniques for recording the laboratory information produced have not kept pace. One approach is the development of laboratory information-management systems (LIMS), which typically use a relational da...
Autores principales: | , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2011
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3069740/ https://www.ncbi.nlm.nih.gov/pubmed/21460443 http://dx.doi.org/10.1107/S0907444911007943 |
_version_ | 1782201355482431488 |
---|---|
author | Morris, Chris Pajon, Anne Griffiths, Susanne L. Daniel, Ed Savitsky, Marc Lin, Bill Diprose, Jonathan M. Wilter da Silva, Alan Pilicheva, Katya Troshin, Peter van Niekerk, Johannes Isaacs, Neil Naismith, James Nave, Colin Blake, Richard Wilson, Keith S. Stuart, David I. Henrick, Kim Esnouf, Robert M. |
author_facet | Morris, Chris Pajon, Anne Griffiths, Susanne L. Daniel, Ed Savitsky, Marc Lin, Bill Diprose, Jonathan M. Wilter da Silva, Alan Pilicheva, Katya Troshin, Peter van Niekerk, Johannes Isaacs, Neil Naismith, James Nave, Colin Blake, Richard Wilson, Keith S. Stuart, David I. Henrick, Kim Esnouf, Robert M. |
author_sort | Morris, Chris |
collection | PubMed |
description | The techniques used in protein production and structural biology have been developing rapidly, but techniques for recording the laboratory information produced have not kept pace. One approach is the development of laboratory information-management systems (LIMS), which typically use a relational database schema to model and store results from a laboratory workflow. The underlying philosophy and implementation of the Protein Information Management System (PiMS), a LIMS development specifically targeted at the flexible and unpredictable workflows of protein-production research laboratories of all scales, is described. PiMS is a web-based Java application that uses either Postgres or Oracle as the underlying relational database-management system. PiMS is available under a free licence to all academic laboratories either for local installation or for use as a managed service. |
format | Text |
id | pubmed-3069740 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-30697402011-04-07 The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory Morris, Chris Pajon, Anne Griffiths, Susanne L. Daniel, Ed Savitsky, Marc Lin, Bill Diprose, Jonathan M. Wilter da Silva, Alan Pilicheva, Katya Troshin, Peter van Niekerk, Johannes Isaacs, Neil Naismith, James Nave, Colin Blake, Richard Wilson, Keith S. Stuart, David I. Henrick, Kim Esnouf, Robert M. Acta Crystallogr D Biol Crystallogr Research Papers The techniques used in protein production and structural biology have been developing rapidly, but techniques for recording the laboratory information produced have not kept pace. One approach is the development of laboratory information-management systems (LIMS), which typically use a relational database schema to model and store results from a laboratory workflow. The underlying philosophy and implementation of the Protein Information Management System (PiMS), a LIMS development specifically targeted at the flexible and unpredictable workflows of protein-production research laboratories of all scales, is described. PiMS is a web-based Java application that uses either Postgres or Oracle as the underlying relational database-management system. PiMS is available under a free licence to all academic laboratories either for local installation or for use as a managed service. International Union of Crystallography 2011-04-01 2011-03-18 /pmc/articles/PMC3069740/ /pubmed/21460443 http://dx.doi.org/10.1107/S0907444911007943 Text en © Morris et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Morris, Chris Pajon, Anne Griffiths, Susanne L. Daniel, Ed Savitsky, Marc Lin, Bill Diprose, Jonathan M. Wilter da Silva, Alan Pilicheva, Katya Troshin, Peter van Niekerk, Johannes Isaacs, Neil Naismith, James Nave, Colin Blake, Richard Wilson, Keith S. Stuart, David I. Henrick, Kim Esnouf, Robert M. The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory |
title | The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory |
title_full | The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory |
title_fullStr | The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory |
title_full_unstemmed | The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory |
title_short | The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory |
title_sort | protein information management system (pims): a generic tool for any structural biology research laboratory |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3069740/ https://www.ncbi.nlm.nih.gov/pubmed/21460443 http://dx.doi.org/10.1107/S0907444911007943 |
work_keys_str_mv | AT morrischris theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT pajonanne theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT griffithssusannel theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT danieled theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT savitskymarc theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT linbill theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT diprosejonathanm theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT wilterdasilvaalan theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT pilichevakatya theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT troshinpeter theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT vanniekerkjohannes theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT isaacsneil theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT naismithjames theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT navecolin theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT blakerichard theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT wilsonkeiths theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT stuartdavidi theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT henrickkim theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT esnoufrobertm theproteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT morrischris proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT pajonanne proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT griffithssusannel proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT danieled proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT savitskymarc proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT linbill proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT diprosejonathanm proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT wilterdasilvaalan proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT pilichevakatya proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT troshinpeter proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT vanniekerkjohannes proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT isaacsneil proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT naismithjames proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT navecolin proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT blakerichard proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT wilsonkeiths proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT stuartdavidi proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT henrickkim proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory AT esnoufrobertm proteininformationmanagementsystempimsagenerictoolforanystructuralbiologyresearchlaboratory |