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Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems
To comprehend the hierarchical organization of large integrated systems, we introduce the hierarchical map equation, which reveals multilevel structures in networks. In this information-theoretic approach, we exploit the duality between compression and pattern detection; by compressing a description...
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Formato: | Texto |
Lenguaje: | English |
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Public Library of Science
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072965/ https://www.ncbi.nlm.nih.gov/pubmed/21494658 http://dx.doi.org/10.1371/journal.pone.0018209 |
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author | Rosvall, Martin Bergstrom, Carl T. |
author_facet | Rosvall, Martin Bergstrom, Carl T. |
author_sort | Rosvall, Martin |
collection | PubMed |
description | To comprehend the hierarchical organization of large integrated systems, we introduce the hierarchical map equation, which reveals multilevel structures in networks. In this information-theoretic approach, we exploit the duality between compression and pattern detection; by compressing a description of a random walker as a proxy for real flow on a network, we find regularities in the network that induce this system-wide flow. Finding the shortest multilevel description of the random walker therefore gives us the best hierarchical clustering of the network — the optimal number of levels and modular partition at each level — with respect to the dynamics on the network. With a novel search algorithm, we extract and illustrate the rich multilevel organization of several large social and biological networks. For example, from the global air traffic network we uncover countries and continents, and from the pattern of scientific communication we reveal more than 100 scientific fields organized in four major disciplines: life sciences, physical sciences, ecology and earth sciences, and social sciences. In general, we find shallow hierarchical structures in globally interconnected systems, such as neural networks, and rich multilevel organizations in systems with highly separated regions, such as road networks. |
format | Text |
id | pubmed-3072965 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-30729652011-04-14 Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems Rosvall, Martin Bergstrom, Carl T. PLoS One Research Article To comprehend the hierarchical organization of large integrated systems, we introduce the hierarchical map equation, which reveals multilevel structures in networks. In this information-theoretic approach, we exploit the duality between compression and pattern detection; by compressing a description of a random walker as a proxy for real flow on a network, we find regularities in the network that induce this system-wide flow. Finding the shortest multilevel description of the random walker therefore gives us the best hierarchical clustering of the network — the optimal number of levels and modular partition at each level — with respect to the dynamics on the network. With a novel search algorithm, we extract and illustrate the rich multilevel organization of several large social and biological networks. For example, from the global air traffic network we uncover countries and continents, and from the pattern of scientific communication we reveal more than 100 scientific fields organized in four major disciplines: life sciences, physical sciences, ecology and earth sciences, and social sciences. In general, we find shallow hierarchical structures in globally interconnected systems, such as neural networks, and rich multilevel organizations in systems with highly separated regions, such as road networks. Public Library of Science 2011-04-08 /pmc/articles/PMC3072965/ /pubmed/21494658 http://dx.doi.org/10.1371/journal.pone.0018209 Text en Rosvall, Bergstrom. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Rosvall, Martin Bergstrom, Carl T. Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems |
title | Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems |
title_full | Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems |
title_fullStr | Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems |
title_full_unstemmed | Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems |
title_short | Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems |
title_sort | multilevel compression of random walks on networks reveals hierarchical organization in large integrated systems |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072965/ https://www.ncbi.nlm.nih.gov/pubmed/21494658 http://dx.doi.org/10.1371/journal.pone.0018209 |
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