Cargando…
How to measure diagnosis-associated information in virtual slides
The distribution of diagnosis-associated information in histological slides is often spatial dependent. A reliable selection of the slide areas containing the most significant information to deriving the associated diagnosis is a major task in virtual microscopy. Three different algorithms can be us...
Autores principales: | , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2011
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073227/ https://www.ncbi.nlm.nih.gov/pubmed/21489204 http://dx.doi.org/10.1186/1746-1596-6-S1-S9 |
_version_ | 1782201627516600320 |
---|---|
author | Kayser, Klaus Görtler, Jürgen Borkenfeld, Stephan Kayser, Gian |
author_facet | Kayser, Klaus Görtler, Jürgen Borkenfeld, Stephan Kayser, Gian |
author_sort | Kayser, Klaus |
collection | PubMed |
description | The distribution of diagnosis-associated information in histological slides is often spatial dependent. A reliable selection of the slide areas containing the most significant information to deriving the associated diagnosis is a major task in virtual microscopy. Three different algorithms can be used to select the appropriate fields of view: 1) Object dependent segmentation combined with graph theory; 2) time series associated texture analysis; and 3) geometrical statistics based upon geometrical primitives. These methods can be applied by sliding technique (i.e., field of view selection with fixed frames), and by cluster analysis. The implementation of these methods requires a standardization of images in terms of vignette correction and gray value distribution as well as determination of appropriate magnification (method 1 only). A principle component analysis of the color space can significantly reduce the necessary computation time. Method 3 is based upon gray value dependent segmentation followed by graph theory application using the construction of (associated) minimum spanning tree and Voronoi’s neighbourhood condition. The three methods have been applied on large sets of histological images comprising different organs (colon, lung, pleura, stomach, thyroid) and different magnifications, The trials resulted in a reproducible and correct selection of fields of view in all three methods. The different algorithms can be combined to a basic technique of field of view selection, and a general theory of “image information” can be derived. The advantages and constraints of the applied methods will be discussed. |
format | Text |
id | pubmed-3073227 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-30732272011-04-12 How to measure diagnosis-associated information in virtual slides Kayser, Klaus Görtler, Jürgen Borkenfeld, Stephan Kayser, Gian Diagn Pathol Proceedings The distribution of diagnosis-associated information in histological slides is often spatial dependent. A reliable selection of the slide areas containing the most significant information to deriving the associated diagnosis is a major task in virtual microscopy. Three different algorithms can be used to select the appropriate fields of view: 1) Object dependent segmentation combined with graph theory; 2) time series associated texture analysis; and 3) geometrical statistics based upon geometrical primitives. These methods can be applied by sliding technique (i.e., field of view selection with fixed frames), and by cluster analysis. The implementation of these methods requires a standardization of images in terms of vignette correction and gray value distribution as well as determination of appropriate magnification (method 1 only). A principle component analysis of the color space can significantly reduce the necessary computation time. Method 3 is based upon gray value dependent segmentation followed by graph theory application using the construction of (associated) minimum spanning tree and Voronoi’s neighbourhood condition. The three methods have been applied on large sets of histological images comprising different organs (colon, lung, pleura, stomach, thyroid) and different magnifications, The trials resulted in a reproducible and correct selection of fields of view in all three methods. The different algorithms can be combined to a basic technique of field of view selection, and a general theory of “image information” can be derived. The advantages and constraints of the applied methods will be discussed. BioMed Central 2011-03-30 /pmc/articles/PMC3073227/ /pubmed/21489204 http://dx.doi.org/10.1186/1746-1596-6-S1-S9 Text en Copyright ©2011 Kayser et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Proceedings Kayser, Klaus Görtler, Jürgen Borkenfeld, Stephan Kayser, Gian How to measure diagnosis-associated information in virtual slides |
title | How to measure diagnosis-associated information in virtual slides |
title_full | How to measure diagnosis-associated information in virtual slides |
title_fullStr | How to measure diagnosis-associated information in virtual slides |
title_full_unstemmed | How to measure diagnosis-associated information in virtual slides |
title_short | How to measure diagnosis-associated information in virtual slides |
title_sort | how to measure diagnosis-associated information in virtual slides |
topic | Proceedings |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073227/ https://www.ncbi.nlm.nih.gov/pubmed/21489204 http://dx.doi.org/10.1186/1746-1596-6-S1-S9 |
work_keys_str_mv | AT kayserklaus howtomeasurediagnosisassociatedinformationinvirtualslides AT gortlerjurgen howtomeasurediagnosisassociatedinformationinvirtualslides AT borkenfeldstephan howtomeasurediagnosisassociatedinformationinvirtualslides AT kaysergian howtomeasurediagnosisassociatedinformationinvirtualslides |