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How to measure diagnosis-associated information in virtual slides

The distribution of diagnosis-associated information in histological slides is often spatial dependent. A reliable selection of the slide areas containing the most significant information to deriving the associated diagnosis is a major task in virtual microscopy. Three different algorithms can be us...

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Detalles Bibliográficos
Autores principales: Kayser, Klaus, Görtler, Jürgen, Borkenfeld, Stephan, Kayser, Gian
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073227/
https://www.ncbi.nlm.nih.gov/pubmed/21489204
http://dx.doi.org/10.1186/1746-1596-6-S1-S9
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author Kayser, Klaus
Görtler, Jürgen
Borkenfeld, Stephan
Kayser, Gian
author_facet Kayser, Klaus
Görtler, Jürgen
Borkenfeld, Stephan
Kayser, Gian
author_sort Kayser, Klaus
collection PubMed
description The distribution of diagnosis-associated information in histological slides is often spatial dependent. A reliable selection of the slide areas containing the most significant information to deriving the associated diagnosis is a major task in virtual microscopy. Three different algorithms can be used to select the appropriate fields of view: 1) Object dependent segmentation combined with graph theory; 2) time series associated texture analysis; and 3) geometrical statistics based upon geometrical primitives. These methods can be applied by sliding technique (i.e., field of view selection with fixed frames), and by cluster analysis. The implementation of these methods requires a standardization of images in terms of vignette correction and gray value distribution as well as determination of appropriate magnification (method 1 only). A principle component analysis of the color space can significantly reduce the necessary computation time. Method 3 is based upon gray value dependent segmentation followed by graph theory application using the construction of (associated) minimum spanning tree and Voronoi’s neighbourhood condition. The three methods have been applied on large sets of histological images comprising different organs (colon, lung, pleura, stomach, thyroid) and different magnifications, The trials resulted in a reproducible and correct selection of fields of view in all three methods. The different algorithms can be combined to a basic technique of field of view selection, and a general theory of “image information” can be derived. The advantages and constraints of the applied methods will be discussed.
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spelling pubmed-30732272011-04-12 How to measure diagnosis-associated information in virtual slides Kayser, Klaus Görtler, Jürgen Borkenfeld, Stephan Kayser, Gian Diagn Pathol Proceedings The distribution of diagnosis-associated information in histological slides is often spatial dependent. A reliable selection of the slide areas containing the most significant information to deriving the associated diagnosis is a major task in virtual microscopy. Three different algorithms can be used to select the appropriate fields of view: 1) Object dependent segmentation combined with graph theory; 2) time series associated texture analysis; and 3) geometrical statistics based upon geometrical primitives. These methods can be applied by sliding technique (i.e., field of view selection with fixed frames), and by cluster analysis. The implementation of these methods requires a standardization of images in terms of vignette correction and gray value distribution as well as determination of appropriate magnification (method 1 only). A principle component analysis of the color space can significantly reduce the necessary computation time. Method 3 is based upon gray value dependent segmentation followed by graph theory application using the construction of (associated) minimum spanning tree and Voronoi’s neighbourhood condition. The three methods have been applied on large sets of histological images comprising different organs (colon, lung, pleura, stomach, thyroid) and different magnifications, The trials resulted in a reproducible and correct selection of fields of view in all three methods. The different algorithms can be combined to a basic technique of field of view selection, and a general theory of “image information” can be derived. The advantages and constraints of the applied methods will be discussed. BioMed Central 2011-03-30 /pmc/articles/PMC3073227/ /pubmed/21489204 http://dx.doi.org/10.1186/1746-1596-6-S1-S9 Text en Copyright ©2011 Kayser et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Proceedings
Kayser, Klaus
Görtler, Jürgen
Borkenfeld, Stephan
Kayser, Gian
How to measure diagnosis-associated information in virtual slides
title How to measure diagnosis-associated information in virtual slides
title_full How to measure diagnosis-associated information in virtual slides
title_fullStr How to measure diagnosis-associated information in virtual slides
title_full_unstemmed How to measure diagnosis-associated information in virtual slides
title_short How to measure diagnosis-associated information in virtual slides
title_sort how to measure diagnosis-associated information in virtual slides
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3073227/
https://www.ncbi.nlm.nih.gov/pubmed/21489204
http://dx.doi.org/10.1186/1746-1596-6-S1-S9
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