Comparative visualization of genetic and physical maps with Strudel

Summary: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large d...

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Detalles Bibliográficos
Autores principales: Bayer, Micha, Milne, Iain, Stephen, Gordon, Shaw, Paul, Cardle, Linda, Wright, Frank, Marshall, David
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3077070/
https://www.ncbi.nlm.nih.gov/pubmed/21372085
http://dx.doi.org/10.1093/bioinformatics/btr111
Descripción
Sumario:Summary: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these. Availability and implementation: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/. Contact: strudel@scri.ac.uk; micha.bayer@scri.ac.uk

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