Comparative visualization of genetic and physical maps with Strudel

Summary: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large d...

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Detalles Bibliográficos
Autores principales: Bayer, Micha, Milne, Iain, Stephen, Gordon, Shaw, Paul, Cardle, Linda, Wright, Frank, Marshall, David
Formato: Texto
Lenguaje:English
Publicado: Oxford University Press 2011
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3077070/
https://www.ncbi.nlm.nih.gov/pubmed/21372085
http://dx.doi.org/10.1093/bioinformatics/btr111
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author Bayer, Micha
Milne, Iain
Stephen, Gordon
Shaw, Paul
Cardle, Linda
Wright, Frank
Marshall, David
author_facet Bayer, Micha
Milne, Iain
Stephen, Gordon
Shaw, Paul
Cardle, Linda
Wright, Frank
Marshall, David
author_sort Bayer, Micha
collection PubMed
description Summary: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these. Availability and implementation: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/. Contact: strudel@scri.ac.uk; micha.bayer@scri.ac.uk
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spelling pubmed-30770702011-04-14 Comparative visualization of genetic and physical maps with Strudel Bayer, Micha Milne, Iain Stephen, Gordon Shaw, Paul Cardle, Linda Wright, Frank Marshall, David Bioinformatics Applications Note Summary: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these. Availability and implementation: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/. Contact: strudel@scri.ac.uk; micha.bayer@scri.ac.uk Oxford University Press 2011-05-01 2011-03-03 /pmc/articles/PMC3077070/ /pubmed/21372085 http://dx.doi.org/10.1093/bioinformatics/btr111 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Note
Bayer, Micha
Milne, Iain
Stephen, Gordon
Shaw, Paul
Cardle, Linda
Wright, Frank
Marshall, David
Comparative visualization of genetic and physical maps with Strudel
title Comparative visualization of genetic and physical maps with Strudel
title_full Comparative visualization of genetic and physical maps with Strudel
title_fullStr Comparative visualization of genetic and physical maps with Strudel
title_full_unstemmed Comparative visualization of genetic and physical maps with Strudel
title_short Comparative visualization of genetic and physical maps with Strudel
title_sort comparative visualization of genetic and physical maps with strudel
topic Applications Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3077070/
https://www.ncbi.nlm.nih.gov/pubmed/21372085
http://dx.doi.org/10.1093/bioinformatics/btr111
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