Cargando…
Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation
Biological systems are characterized by a high number of interacting components. Determining the role of each component is difficult, addressed here in the context of biological oscillations. Rhythmic behavior can result from the interplay of positive feedback that promotes bistability between high...
Autores principales: | , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2011
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3080843/ https://www.ncbi.nlm.nih.gov/pubmed/21533065 http://dx.doi.org/10.1371/journal.pcbi.1001124 |
_version_ | 1782202150420480000 |
---|---|
author | Tabak, Joël Rinzel, John Bertram, Richard |
author_facet | Tabak, Joël Rinzel, John Bertram, Richard |
author_sort | Tabak, Joël |
collection | PubMed |
description | Biological systems are characterized by a high number of interacting components. Determining the role of each component is difficult, addressed here in the context of biological oscillations. Rhythmic behavior can result from the interplay of positive feedback that promotes bistability between high and low activity, and slow negative feedback that switches the system between the high and low activity states. Many biological oscillators include two types of negative feedback processes: divisive (decreases the gain of the positive feedback loop) and subtractive (increases the input threshold) that both contribute to slowly move the system between the high- and low-activity states. Can we determine the relative contribution of each type of negative feedback process to the rhythmic activity? Does one dominate? Do they control the active and silent phase equally? To answer these questions we use a neural network model with excitatory coupling, regulated by synaptic depression (divisive) and cellular adaptation (subtractive feedback). We first attempt to apply standard experimental methodologies: either passive observation to correlate the variations of a variable of interest to system behavior, or deletion of a component to establish whether a component is critical for the system. We find that these two strategies can lead to contradictory conclusions, and at best their interpretive power is limited. We instead develop a computational measure of the contribution of a process, by evaluating the sensitivity of the active (high activity) and silent (low activity) phase durations to the time constant of the process. The measure shows that both processes control the active phase, in proportion to their speed and relative weight. However, only the subtractive process plays a major role in setting the duration of the silent phase. This computational method can be used to analyze the role of negative feedback processes in a wide range of biological rhythms. |
format | Text |
id | pubmed-3080843 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-30808432011-04-29 Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation Tabak, Joël Rinzel, John Bertram, Richard PLoS Comput Biol Research Article Biological systems are characterized by a high number of interacting components. Determining the role of each component is difficult, addressed here in the context of biological oscillations. Rhythmic behavior can result from the interplay of positive feedback that promotes bistability between high and low activity, and slow negative feedback that switches the system between the high and low activity states. Many biological oscillators include two types of negative feedback processes: divisive (decreases the gain of the positive feedback loop) and subtractive (increases the input threshold) that both contribute to slowly move the system between the high- and low-activity states. Can we determine the relative contribution of each type of negative feedback process to the rhythmic activity? Does one dominate? Do they control the active and silent phase equally? To answer these questions we use a neural network model with excitatory coupling, regulated by synaptic depression (divisive) and cellular adaptation (subtractive feedback). We first attempt to apply standard experimental methodologies: either passive observation to correlate the variations of a variable of interest to system behavior, or deletion of a component to establish whether a component is critical for the system. We find that these two strategies can lead to contradictory conclusions, and at best their interpretive power is limited. We instead develop a computational measure of the contribution of a process, by evaluating the sensitivity of the active (high activity) and silent (low activity) phase durations to the time constant of the process. The measure shows that both processes control the active phase, in proportion to their speed and relative weight. However, only the subtractive process plays a major role in setting the duration of the silent phase. This computational method can be used to analyze the role of negative feedback processes in a wide range of biological rhythms. Public Library of Science 2011-04-21 /pmc/articles/PMC3080843/ /pubmed/21533065 http://dx.doi.org/10.1371/journal.pcbi.1001124 Text en Tabak et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Tabak, Joël Rinzel, John Bertram, Richard Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation |
title | Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation |
title_full | Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation |
title_fullStr | Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation |
title_full_unstemmed | Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation |
title_short | Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation |
title_sort | quantifying the relative contributions of divisive and subtractive feedback to rhythm generation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3080843/ https://www.ncbi.nlm.nih.gov/pubmed/21533065 http://dx.doi.org/10.1371/journal.pcbi.1001124 |
work_keys_str_mv | AT tabakjoel quantifyingtherelativecontributionsofdivisiveandsubtractivefeedbacktorhythmgeneration AT rinzeljohn quantifyingtherelativecontributionsofdivisiveandsubtractivefeedbacktorhythmgeneration AT bertramrichard quantifyingtherelativecontributionsofdivisiveandsubtractivefeedbacktorhythmgeneration |