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Ontologies and Standards in Bioscience Research: For Machine or for Human
Ontologies and standards are very important parts of today's bioscience research. With the rapid increase of biological knowledge, they provide mechanisms to better store and represent data in a controlled and structured way, so that scientists can share the data, and utilize a wide variety of...
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Formato: | Texto |
Lenguaje: | English |
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Frontiers Research Foundation
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3081276/ https://www.ncbi.nlm.nih.gov/pubmed/21519400 http://dx.doi.org/10.3389/fphys.2011.00005 |
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author | Mi, Huaiyu Thomas, Paul D. |
author_facet | Mi, Huaiyu Thomas, Paul D. |
author_sort | Mi, Huaiyu |
collection | PubMed |
description | Ontologies and standards are very important parts of today's bioscience research. With the rapid increase of biological knowledge, they provide mechanisms to better store and represent data in a controlled and structured way, so that scientists can share the data, and utilize a wide variety of software and tools to manage and analyze the data. Most of these standards are initially designed for computers to access large amounts of data that are difficult for human biologists to handle, and it is important to keep in mind that ultimately biologists are going to produce and interpret the data. While ontologies and standards must follow strict semantic rules that may not be familiar to biologists, effort must be spent to lower the learning barrier by involving biologists in the process of development, and by providing software and tool support. A standard will not succeed without support from the wider bioscience research community. Thus, it is crucial that these standards be designed not only for machines to read, but also to be scientifically accurate and intuitive to human biologists. |
format | Text |
id | pubmed-3081276 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Frontiers Research Foundation |
record_format | MEDLINE/PubMed |
spelling | pubmed-30812762011-04-25 Ontologies and Standards in Bioscience Research: For Machine or for Human Mi, Huaiyu Thomas, Paul D. Front Physiol Physiology Ontologies and standards are very important parts of today's bioscience research. With the rapid increase of biological knowledge, they provide mechanisms to better store and represent data in a controlled and structured way, so that scientists can share the data, and utilize a wide variety of software and tools to manage and analyze the data. Most of these standards are initially designed for computers to access large amounts of data that are difficult for human biologists to handle, and it is important to keep in mind that ultimately biologists are going to produce and interpret the data. While ontologies and standards must follow strict semantic rules that may not be familiar to biologists, effort must be spent to lower the learning barrier by involving biologists in the process of development, and by providing software and tool support. A standard will not succeed without support from the wider bioscience research community. Thus, it is crucial that these standards be designed not only for machines to read, but also to be scientifically accurate and intuitive to human biologists. Frontiers Research Foundation 2011-02-21 /pmc/articles/PMC3081276/ /pubmed/21519400 http://dx.doi.org/10.3389/fphys.2011.00005 Text en Copyright © 2011 Mi and Thomas. http://www.frontiersin.org/licenseagreement This is an open-access article subject to an exclusive license agreement between the authors and Frontiers Media SA, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited. |
spellingShingle | Physiology Mi, Huaiyu Thomas, Paul D. Ontologies and Standards in Bioscience Research: For Machine or for Human |
title | Ontologies and Standards in Bioscience Research: For Machine or for Human |
title_full | Ontologies and Standards in Bioscience Research: For Machine or for Human |
title_fullStr | Ontologies and Standards in Bioscience Research: For Machine or for Human |
title_full_unstemmed | Ontologies and Standards in Bioscience Research: For Machine or for Human |
title_short | Ontologies and Standards in Bioscience Research: For Machine or for Human |
title_sort | ontologies and standards in bioscience research: for machine or for human |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3081276/ https://www.ncbi.nlm.nih.gov/pubmed/21519400 http://dx.doi.org/10.3389/fphys.2011.00005 |
work_keys_str_mv | AT mihuaiyu ontologiesandstandardsinbioscienceresearchformachineorforhuman AT thomaspauld ontologiesandstandardsinbioscienceresearchformachineorforhuman |