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New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria

The subcellular localization and physiological functions of biomolecules are closely related and thus it is crucial to precisely determine the distribution of different molecules inside the intracellular structures. This is frequently accomplished by fluorescence microscopy with well-characterized m...

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Autores principales: Villalta, Jorge Ignacio, Galli, Soledad, Iacaruso, María Florencia, Antico Arciuch, Valeria Gabriela, Poderoso, Juan José, Jares-Erijman, Elizabeth Andrea, Pietrasanta, Lía Isabel
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3084741/
https://www.ncbi.nlm.nih.gov/pubmed/21559502
http://dx.doi.org/10.1371/journal.pone.0019031
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author Villalta, Jorge Ignacio
Galli, Soledad
Iacaruso, María Florencia
Antico Arciuch, Valeria Gabriela
Poderoso, Juan José
Jares-Erijman, Elizabeth Andrea
Pietrasanta, Lía Isabel
author_facet Villalta, Jorge Ignacio
Galli, Soledad
Iacaruso, María Florencia
Antico Arciuch, Valeria Gabriela
Poderoso, Juan José
Jares-Erijman, Elizabeth Andrea
Pietrasanta, Lía Isabel
author_sort Villalta, Jorge Ignacio
collection PubMed
description The subcellular localization and physiological functions of biomolecules are closely related and thus it is crucial to precisely determine the distribution of different molecules inside the intracellular structures. This is frequently accomplished by fluorescence microscopy with well-characterized markers and posterior evaluation of the signal colocalization. Rigorous study of colocalization requires statistical analysis of the data, albeit yet no single technique has been established as a standard method. Indeed, the few methods currently available are only accurate in images with particular characteristics. Here, we introduce a new algorithm to automatically obtain the true colocalization between images that is suitable for a wide variety of biological situations. To proceed, the algorithm contemplates the individual contribution of each pixel's fluorescence intensity in a pair of images to the overall Pearsońs correlation and Manders' overlap coefficients. The accuracy and reliability of the algorithm was validated on both simulated and real images that reflected the characteristics of a range of biological samples. We used this algorithm in combination with image restoration by deconvolution and time-lapse confocal microscopy to address the localization of MEK1 in the mitochondria of different cell lines. Appraising the previously described behavior of Akt1 corroborated the reliability of the combined use of these techniques. Together, the present work provides a novel statistical approach to accurately and reliably determine the colocalization in a variety of biological images.
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spelling pubmed-30847412011-05-10 New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria Villalta, Jorge Ignacio Galli, Soledad Iacaruso, María Florencia Antico Arciuch, Valeria Gabriela Poderoso, Juan José Jares-Erijman, Elizabeth Andrea Pietrasanta, Lía Isabel PLoS One Research Article The subcellular localization and physiological functions of biomolecules are closely related and thus it is crucial to precisely determine the distribution of different molecules inside the intracellular structures. This is frequently accomplished by fluorescence microscopy with well-characterized markers and posterior evaluation of the signal colocalization. Rigorous study of colocalization requires statistical analysis of the data, albeit yet no single technique has been established as a standard method. Indeed, the few methods currently available are only accurate in images with particular characteristics. Here, we introduce a new algorithm to automatically obtain the true colocalization between images that is suitable for a wide variety of biological situations. To proceed, the algorithm contemplates the individual contribution of each pixel's fluorescence intensity in a pair of images to the overall Pearsońs correlation and Manders' overlap coefficients. The accuracy and reliability of the algorithm was validated on both simulated and real images that reflected the characteristics of a range of biological samples. We used this algorithm in combination with image restoration by deconvolution and time-lapse confocal microscopy to address the localization of MEK1 in the mitochondria of different cell lines. Appraising the previously described behavior of Akt1 corroborated the reliability of the combined use of these techniques. Together, the present work provides a novel statistical approach to accurately and reliably determine the colocalization in a variety of biological images. Public Library of Science 2011-04-29 /pmc/articles/PMC3084741/ /pubmed/21559502 http://dx.doi.org/10.1371/journal.pone.0019031 Text en Villalta et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Villalta, Jorge Ignacio
Galli, Soledad
Iacaruso, María Florencia
Antico Arciuch, Valeria Gabriela
Poderoso, Juan José
Jares-Erijman, Elizabeth Andrea
Pietrasanta, Lía Isabel
New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria
title New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria
title_full New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria
title_fullStr New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria
title_full_unstemmed New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria
title_short New Algorithm to Determine True Colocalization in Combination with Image Restoration and Time-Lapse Confocal Microscopy to Map Kinases in Mitochondria
title_sort new algorithm to determine true colocalization in combination with image restoration and time-lapse confocal microscopy to map kinases in mitochondria
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3084741/
https://www.ncbi.nlm.nih.gov/pubmed/21559502
http://dx.doi.org/10.1371/journal.pone.0019031
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