Cargando…
Investigation of human haemotropic Mycoplasma infections using a novel generic haemoplasma qPCR assay on blood samples and blood smears
The aim of this study was to develop quantitative real-time (q)PCR assays to detect all known haemoplasma species, and a human housekeeping gene in order to demonstrate both successful DNA extraction from clinical samples and to test for sample inhibition, and to apply these qPCRs to human blood sam...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Texto |
Lenguaje: | English |
Publicado: |
Society for General Microbiology
2010
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3090618/ https://www.ncbi.nlm.nih.gov/pubmed/20651038 http://dx.doi.org/10.1099/jmm.0.021691-0 |
_version_ | 1782203166933123072 |
---|---|
author | Tasker, Séverine Peters, Iain R. Mumford, Andrew D. Day, Michael J. Gruffydd-Jones, Timothy J. Day, Sarinder Pretorius, Anne-Marie Birtles, Richard J. Helps, Chris R. Neimark, Harold |
author_facet | Tasker, Séverine Peters, Iain R. Mumford, Andrew D. Day, Michael J. Gruffydd-Jones, Timothy J. Day, Sarinder Pretorius, Anne-Marie Birtles, Richard J. Helps, Chris R. Neimark, Harold |
author_sort | Tasker, Séverine |
collection | PubMed |
description | The aim of this study was to develop quantitative real-time (q)PCR assays to detect all known haemoplasma species, and a human housekeeping gene in order to demonstrate both successful DNA extraction from clinical samples and to test for sample inhibition, and to apply these qPCRs to human blood samples and blood smears. Sensitive and specific generic haemoplasma qPCR assays were developed to amplify haemoplasma species, as well as human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as an internal amplification control. An optimized technique for extracting DNA from stained blood smears was also developed. These methods were applied to anonymized blood samples obtained from 100 human immunodeficiency virus (HIV)-infected South Africans and 920 UK patients undergoing haematological examination, and to 15 blood smears recruited from previous studies describing human haemoplasmosis. Human GAPDH levels were acceptable in all but three of the blood samples and all but two of the blood smears. The latter could have arisen due to DNA degradation due to the old age (over 35 years) of these smears. Haemoplasma infection was found in one HIV-infected South African, but the species could not be characterized due to the very low levels of DNA present. This report describes novel extraction and qPCR methodologies for haemoplasma screening. Previously reported human haemoplasmosis based on cytological diagnosis alone should be viewed with caution. |
format | Text |
id | pubmed-3090618 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Society for General Microbiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-30906182011-06-13 Investigation of human haemotropic Mycoplasma infections using a novel generic haemoplasma qPCR assay on blood samples and blood smears Tasker, Séverine Peters, Iain R. Mumford, Andrew D. Day, Michael J. Gruffydd-Jones, Timothy J. Day, Sarinder Pretorius, Anne-Marie Birtles, Richard J. Helps, Chris R. Neimark, Harold J Med Microbiol Diagnostics, Typing and Identification The aim of this study was to develop quantitative real-time (q)PCR assays to detect all known haemoplasma species, and a human housekeeping gene in order to demonstrate both successful DNA extraction from clinical samples and to test for sample inhibition, and to apply these qPCRs to human blood samples and blood smears. Sensitive and specific generic haemoplasma qPCR assays were developed to amplify haemoplasma species, as well as human glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as an internal amplification control. An optimized technique for extracting DNA from stained blood smears was also developed. These methods were applied to anonymized blood samples obtained from 100 human immunodeficiency virus (HIV)-infected South Africans and 920 UK patients undergoing haematological examination, and to 15 blood smears recruited from previous studies describing human haemoplasmosis. Human GAPDH levels were acceptable in all but three of the blood samples and all but two of the blood smears. The latter could have arisen due to DNA degradation due to the old age (over 35 years) of these smears. Haemoplasma infection was found in one HIV-infected South African, but the species could not be characterized due to the very low levels of DNA present. This report describes novel extraction and qPCR methodologies for haemoplasma screening. Previously reported human haemoplasmosis based on cytological diagnosis alone should be viewed with caution. Society for General Microbiology 2010-11 /pmc/articles/PMC3090618/ /pubmed/20651038 http://dx.doi.org/10.1099/jmm.0.021691-0 Text en Copyright © 2010, SGM http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Diagnostics, Typing and Identification Tasker, Séverine Peters, Iain R. Mumford, Andrew D. Day, Michael J. Gruffydd-Jones, Timothy J. Day, Sarinder Pretorius, Anne-Marie Birtles, Richard J. Helps, Chris R. Neimark, Harold Investigation of human haemotropic Mycoplasma infections using a novel generic haemoplasma qPCR assay on blood samples and blood smears |
title | Investigation of human haemotropic Mycoplasma infections using a novel generic haemoplasma qPCR assay on blood samples and blood smears |
title_full | Investigation of human haemotropic Mycoplasma infections using a novel generic haemoplasma qPCR assay on blood samples and blood smears |
title_fullStr | Investigation of human haemotropic Mycoplasma infections using a novel generic haemoplasma qPCR assay on blood samples and blood smears |
title_full_unstemmed | Investigation of human haemotropic Mycoplasma infections using a novel generic haemoplasma qPCR assay on blood samples and blood smears |
title_short | Investigation of human haemotropic Mycoplasma infections using a novel generic haemoplasma qPCR assay on blood samples and blood smears |
title_sort | investigation of human haemotropic mycoplasma infections using a novel generic haemoplasma qpcr assay on blood samples and blood smears |
topic | Diagnostics, Typing and Identification |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3090618/ https://www.ncbi.nlm.nih.gov/pubmed/20651038 http://dx.doi.org/10.1099/jmm.0.021691-0 |
work_keys_str_mv | AT taskerseverine investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT petersiainr investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT mumfordandrewd investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT daymichaelj investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT gruffyddjonestimothyj investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT daysarinder investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT pretoriusannemarie investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT birtlesrichardj investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT helpschrisr investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears AT neimarkharold investigationofhumanhaemotropicmycoplasmainfectionsusinganovelgenerichaemoplasmaqpcrassayonbloodsamplesandbloodsmears |