Cargando…

Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX Titanium pyrosequencing

BACKGROUND: Microsatellites are markers of choice in population genetics and genomics, as they provide useful insight into patterns and processes as diverse as genome evolutionary dynamics and demographic processes. The acquisition of microsatellites through multiplex-enriched libraries and 454 GS-F...

Descripción completa

Detalles Bibliográficos
Autores principales:	Martin, Jean-Francois, Pech, Nicolas, Meglécz, Emese, Ferreira, Stéphanie, Costedoat, Caroline, Dubut, Vincent, Malausa, Thibaut, Gilles, André
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2010
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091709/ https://www.ncbi.nlm.nih.gov/pubmed/20939885 http://dx.doi.org/10.1186/1471-2164-11-560

Ejemplares similares

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing
por: Gilles, André, et al.
Publicado: (2011)

Exploring salivary microbiota in AIDS patients with different periodontal statuses using 454 GS-FLX Titanium pyrosequencing
por: Zhang, Fang, et al.
Publicado: (2015)

De novo Sequence Assembly and Characterization of Lycoris aurea Transcriptome Using GS FLX Titanium Platform of 454 Pyrosequencing
por: Wang, Ren, et al.
Publicado: (2013)

Exploring Bacterial Diversity in Hospital Environments by GS-FLX Titanium Pyrosequencing
por: Poza, Margarita, et al.
Publicado: (2012)

De novo assembly and transcriptome analysis of five major tissues of Jatropha curcas L. using GS FLX titanium platform of 454 pyrosequencing
por: Natarajan, Purushothaman, et al.
Publicado: (2011)

The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer
por: Chun, Jongsik, et al.
Publicado: (2010)

A shot in the genome: how accurately do shotgun 454 sequences represent a genome?
por: Meglécz, Emese, et al.
Publicado: (2012)

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome
por: Quinn, Nicole L, et al.
Publicado: (2008)

Cross-species amplification of 41 microsatellites in European cyprinids: A tool for evolutionary, population genetics and hybridization studies
por: Dubut, Vincent, et al.
Publicado: (2010)

High-Throughput Analysis and Characterization of Astragalus membranaceus Transcriptome Using 454 GS FLX
por: Liu, Xiu-Bo, et al.
Publicado: (2014)

Evaluation of human gene variant detection in amplicon pools by the GS-FLX parallel Pyrosequencer
por: Bordoni, Roberta, et al.
Publicado: (2008)

Transcriptome Sequencing and De Novo Analysis of the Copepod Calanus sinicus Using 454 GS FLX
por: Ning, Juan, et al.
Publicado: (2013)

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX
por: Hou, Rui, et al.
Publicado: (2011)

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies
por: Pandey, Ram Vinay, et al.
Publicado: (2010)

An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform
por: Zhang, Tongwu, et al.
Publicado: (2011)

Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species
por: Meglécz, Emese, et al.
Publicado: (2012)

Correction: Breakdown of Phylogenetic Signal: A Survey of Microsatellite Densities in 454 Shotgun Sequences from 154 Non Model Eukaryote Species
por: Meglécz, Emese, et al.
Publicado: (2013)

Targeted sequence capture and GS-FLX Titanium sequencing of 23 hypertrophic and dilated cardiomyopathy genes: implementation into diagnostics
por: Mook, Olaf R F, et al.
Publicado: (2013)

Isolation and Characterization of Microsatellite Markers for Cotinus coggygria Scop. (Anacardiaceae) by 454 Pyrosequencing
por: Wang, Wei, et al.
Publicado: (2014)

Development of 15 nuclear microsatellite markers in Deuterocohnia (Pitcairnioideae; Bromeliaceae) using 454 pyrosequencing
por: Zenk, Fides Lea, et al.
Publicado: (2018)

Polymorphic microsatellite loci for Virola sebifera (Myristicaceae) derived from shotgun 454 pyrosequencing(1)
por: Wei, Na, et al.
Publicado: (2013)

Development of 18 polymorphic microsatellite markers for Vinca minor (Apocynaceae) via 454 pyrosequencing(1)
por: Moeller, Sina, et al.
Publicado: (2015)

Rapid Development of Microsatellite Markers with 454 Pyrosequencing in a Vulnerable Fish, the Mottled Skate, Raja pulchra
por: Kang, Jung-Ha, et al.
Publicado: (2012)

Development of nuclear microsatellites for the Arcto-Tertiary tree Zelkova carpinifolia (Ulmaceae) using 454 pyrosequencing(1)
por: Maharramova, Elmira H., et al.
Publicado: (2014)

Isolation of 18 microsatellite loci in the desert mistletoe Phoradendron californicum (Santalaceae) via 454 pyrosequencing(1)
por: Arroyo, Juan M., et al.
Publicado: (2013)

Microsatellite primers for the fungi Rhizopogon kretzerae and R. salebrosus (Rhizopogonaceae) from 454 shotgun pyrosequencing(1)
por: Grubisha, Lisa C., et al.
Publicado: (2014)

Viral quasispecies inference from 454 pyrosequencing
por: Poh, Wan-Ting, et al.
Publicado: (2013)

Bacterial tag encoded FLX titanium amplicon pyrosequencing (bTEFAP) based assessment of prokaryotic diversity in metagenome of Lonar soda lake, India
por: Dudhagara, Pravin, et al.
Publicado: (2015)

Filtering duplicate reads from 454 pyrosequencing data
por: Balzer, Susanne, et al.
Publicado: (2013)

Evaluation of the bacterial diversity among and within individual venous leg ulcers using bacterial tag-encoded FLX and Titanium amplicon pyrosequencing and metagenomic approaches
por: Wolcott, Randall D, et al.
Publicado: (2009)

Development and characterization of 20 polymorphic microsatellite markers for Epinephelus marginatus (Lowe, 1834) (Perciformes: Epinephelidae) using 454 pyrosequencing
por: Vaini, Jussara Oliveira, et al.
Publicado: (2019)

Antarctic Krill 454 Pyrosequencing Reveals Chaperone and Stress Transcriptome
por: Clark, Melody S., et al.
Publicado: (2011)

Inferring viral quasispecies spectra from 454 pyrosequencing reads
por: Astrovskaya, Irina, et al.
Publicado: (2011)

Characteristics of 454 pyrosequencing data—enabling realistic simulation with flowsim
por: Balzer, Susanne, et al.
Publicado: (2010)

454-Pyrosequencing: A Molecular Battiscope for Freshwater Viral Ecology
por: Rooks, David J., et al.
Publicado: (2010)

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
por: Sun, Chao, et al.
Publicado: (2010)

Development of 17 polymorphic microsatellite loci from Jeju striped field mouse, Apodemus agrarius chejuensis (Rodentia: Muridae), by 454 pyrosequencing
por: Kim, Han-Na, et al.
Publicado: (2018)

Near-Complete Genome Sequencing of Swine Vesicular Disease Virus Using the Roche GS FLX Sequencing Platform
por: Nielsen, Sandra C. Abel, et al.
Publicado: (2014)

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing
por: Durban, Jordi, et al.
Publicado: (2011)

Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches
por: Salem, Mohamed, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_e2abje58of88oop5b4oq0prpke