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Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats

BACKGROUND: Adenosine to inosine (A-to-I) RNA-editing is an essential post-transcriptional mechanism that occurs in numerous sites in the human transcriptome, mainly within Alu repeats. It has been shown to have consistent levels of editing across individuals in a few targets in the human brain and...

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Autores principales: Greenberger, Shoshana, Levanon, Erez Y, Paz-Yaacov, Nurit, Barzilai, Aviv, Safran, Michal, Osenberg, Sivan, Amariglio, Ninette, Rechavi, Gideon, Eisenberg, Eli
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2010
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091749/
https://www.ncbi.nlm.nih.gov/pubmed/21029430
http://dx.doi.org/10.1186/1471-2164-11-608
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author Greenberger, Shoshana
Levanon, Erez Y
Paz-Yaacov, Nurit
Barzilai, Aviv
Safran, Michal
Osenberg, Sivan
Amariglio, Ninette
Rechavi, Gideon
Eisenberg, Eli
author_facet Greenberger, Shoshana
Levanon, Erez Y
Paz-Yaacov, Nurit
Barzilai, Aviv
Safran, Michal
Osenberg, Sivan
Amariglio, Ninette
Rechavi, Gideon
Eisenberg, Eli
author_sort Greenberger, Shoshana
collection PubMed
description BACKGROUND: Adenosine to inosine (A-to-I) RNA-editing is an essential post-transcriptional mechanism that occurs in numerous sites in the human transcriptome, mainly within Alu repeats. It has been shown to have consistent levels of editing across individuals in a few targets in the human brain and altered in several human pathologies. However, the variability across human individuals of editing levels in other tissues has not been studied so far. RESULTS: Here, we analyzed 32 skin samples, looking at A-to-I editing level in three genes within coding sequences and in the Alu repeats of six different genes. We observed highly consistent editing levels across different individuals as well as across tissues, not only in coding targets but, surprisingly, also in the non evolutionary conserved Alu repeats. CONCLUSIONS: Our findings suggest that A-to-I RNA-editing of Alu elements is a tightly regulated process and, as such, might have been recruited in the course of primate evolution for post-transcriptional regulatory mechanisms.
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spelling pubmed-30917492011-05-11 Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats Greenberger, Shoshana Levanon, Erez Y Paz-Yaacov, Nurit Barzilai, Aviv Safran, Michal Osenberg, Sivan Amariglio, Ninette Rechavi, Gideon Eisenberg, Eli BMC Genomics Research Article BACKGROUND: Adenosine to inosine (A-to-I) RNA-editing is an essential post-transcriptional mechanism that occurs in numerous sites in the human transcriptome, mainly within Alu repeats. It has been shown to have consistent levels of editing across individuals in a few targets in the human brain and altered in several human pathologies. However, the variability across human individuals of editing levels in other tissues has not been studied so far. RESULTS: Here, we analyzed 32 skin samples, looking at A-to-I editing level in three genes within coding sequences and in the Alu repeats of six different genes. We observed highly consistent editing levels across different individuals as well as across tissues, not only in coding targets but, surprisingly, also in the non evolutionary conserved Alu repeats. CONCLUSIONS: Our findings suggest that A-to-I RNA-editing of Alu elements is a tightly regulated process and, as such, might have been recruited in the course of primate evolution for post-transcriptional regulatory mechanisms. BioMed Central 2010-10-28 /pmc/articles/PMC3091749/ /pubmed/21029430 http://dx.doi.org/10.1186/1471-2164-11-608 Text en Copyright ©2010 Greenberger et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Greenberger, Shoshana
Levanon, Erez Y
Paz-Yaacov, Nurit
Barzilai, Aviv
Safran, Michal
Osenberg, Sivan
Amariglio, Ninette
Rechavi, Gideon
Eisenberg, Eli
Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats
title Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats
title_full Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats
title_fullStr Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats
title_full_unstemmed Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats
title_short Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats
title_sort consistent levels of a-to-i rna editing across individuals in coding sequences and non-conserved alu repeats
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091749/
https://www.ncbi.nlm.nih.gov/pubmed/21029430
http://dx.doi.org/10.1186/1471-2164-11-608
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