MfSAT: Detect simple sequence repeats in viral genomes

Simple sequence repeats (SSRs) are ubiquitous short tandem repeats, which are associated with various regulatory mechanisms and have been found in viral genomes. Herein, we develop MfSAT (Multi-functional SSRs Analytical Tool), a new powerful tool which can fast identify SSRs in multiple short viral...

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Detalles Bibliográficos
Autores principales: Chen, Ming, Tan, Zhongyang, Zeng, Guangming
Formato: Texto
Lenguaje:English
Publicado: Biomedical Informatics 2011
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3092955/
https://www.ncbi.nlm.nih.gov/pubmed/21572888
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author Chen, Ming
Tan, Zhongyang
Zeng, Guangming
author_facet Chen, Ming
Tan, Zhongyang
Zeng, Guangming
author_sort Chen, Ming
collection PubMed
description Simple sequence repeats (SSRs) are ubiquitous short tandem repeats, which are associated with various regulatory mechanisms and have been found in viral genomes. Herein, we develop MfSAT (Multi-functional SSRs Analytical Tool), a new powerful tool which can fast identify SSRs in multiple short viral genomes and then automatically calculate the numbers and proportions of various SSR types (mono-, di-, tri-, tetra-, penta- and hexanucleotide repeats). Furthermore, it also can detect codon repeats and report the corresponding amino acid.
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spelling pubmed-30929552011-05-13 MfSAT: Detect simple sequence repeats in viral genomes Chen, Ming Tan, Zhongyang Zeng, Guangming Bioinformation Software Simple sequence repeats (SSRs) are ubiquitous short tandem repeats, which are associated with various regulatory mechanisms and have been found in viral genomes. Herein, we develop MfSAT (Multi-functional SSRs Analytical Tool), a new powerful tool which can fast identify SSRs in multiple short viral genomes and then automatically calculate the numbers and proportions of various SSR types (mono-, di-, tri-, tetra-, penta- and hexanucleotide repeats). Furthermore, it also can detect codon repeats and report the corresponding amino acid. Biomedical Informatics 2011-05-07 /pmc/articles/PMC3092955/ /pubmed/21572888 Text en © 2011 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Software
Chen, Ming
Tan, Zhongyang
Zeng, Guangming
MfSAT: Detect simple sequence repeats in viral genomes
title MfSAT: Detect simple sequence repeats in viral genomes
title_full MfSAT: Detect simple sequence repeats in viral genomes
title_fullStr MfSAT: Detect simple sequence repeats in viral genomes
title_full_unstemmed MfSAT: Detect simple sequence repeats in viral genomes
title_short MfSAT: Detect simple sequence repeats in viral genomes
title_sort mfsat: detect simple sequence repeats in viral genomes
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3092955/
https://www.ncbi.nlm.nih.gov/pubmed/21572888
work_keys_str_mv AT chenming mfsatdetectsimplesequencerepeatsinviralgenomes
AT tanzhongyang mfsatdetectsimplesequencerepeatsinviralgenomes
AT zengguangming mfsatdetectsimplesequencerepeatsinviralgenomes

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