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Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers
The conformational landscape of phenylisoserine (PhIS) was studied. Trial structures were generated by allowing for all combinations of single-bond rotamers. Based on the B3LYP/aug-cc-pVDZ calculations 54 conformers were found to be stable in the gas phase. The six most stable conformers were furthe...
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Formato: | Texto |
Lenguaje: | English |
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Springer-Verlag
2010
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3094660/ https://www.ncbi.nlm.nih.gov/pubmed/20623308 http://dx.doi.org/10.1007/s00894-010-0783-8 |
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author | Rode, Joanna E. Dobrowolski, Jan Cz. Sadlej, Joanna |
author_facet | Rode, Joanna E. Dobrowolski, Jan Cz. Sadlej, Joanna |
author_sort | Rode, Joanna E. |
collection | PubMed |
description | The conformational landscape of phenylisoserine (PhIS) was studied. Trial structures were generated by allowing for all combinations of single-bond rotamers. Based on the B3LYP/aug-cc-pVDZ calculations 54 conformers were found to be stable in the gas phase. The six most stable conformers were further optimized at the B3LYP/aug-cc-pVTZ and MP2/aug-cc-pVDZ levels for which characteristic intramolecular hydrogen bond types were classified. To estimate the influence of water on PhIS conformation, the IEF-PCM/B3LYP/aug-cc-pVDZ calculations were carried out and showed 51 neutral and six zwitterionic conformers to be stable in water solution. According to DFT calculations, the conformer equilibrium in the gas phase is dominated by one conformer, whereas the MP2 calculations suggest three PhIS structures to be significantly populated. Comparison of DFT and MP2 energies of all 57 structures stable in water indicates that, in practice, one zwitterionic and one neutral conformer determine the equilibrium in water. Based on the AIM calculations, we found that for the neutral conformers in vacuum and in water, d(H...B) is linearly correlated with Laplacian at the H-bond critical point. [Figure: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00894-010-0783-8) contains supplementary material, which is available to authorized users. |
format | Text |
id | pubmed-3094660 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2010 |
publisher | Springer-Verlag |
record_format | MEDLINE/PubMed |
spelling | pubmed-30946602011-07-07 Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers Rode, Joanna E. Dobrowolski, Jan Cz. Sadlej, Joanna J Mol Model Original Paper The conformational landscape of phenylisoserine (PhIS) was studied. Trial structures were generated by allowing for all combinations of single-bond rotamers. Based on the B3LYP/aug-cc-pVDZ calculations 54 conformers were found to be stable in the gas phase. The six most stable conformers were further optimized at the B3LYP/aug-cc-pVTZ and MP2/aug-cc-pVDZ levels for which characteristic intramolecular hydrogen bond types were classified. To estimate the influence of water on PhIS conformation, the IEF-PCM/B3LYP/aug-cc-pVDZ calculations were carried out and showed 51 neutral and six zwitterionic conformers to be stable in water solution. According to DFT calculations, the conformer equilibrium in the gas phase is dominated by one conformer, whereas the MP2 calculations suggest three PhIS structures to be significantly populated. Comparison of DFT and MP2 energies of all 57 structures stable in water indicates that, in practice, one zwitterionic and one neutral conformer determine the equilibrium in water. Based on the AIM calculations, we found that for the neutral conformers in vacuum and in water, d(H...B) is linearly correlated with Laplacian at the H-bond critical point. [Figure: see text] ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00894-010-0783-8) contains supplementary material, which is available to authorized users. Springer-Verlag 2010-07-11 2011 /pmc/articles/PMC3094660/ /pubmed/20623308 http://dx.doi.org/10.1007/s00894-010-0783-8 Text en © The Author(s) 2010 https://creativecommons.org/licenses/by-nc/4.0/This article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. |
spellingShingle | Original Paper Rode, Joanna E. Dobrowolski, Jan Cz. Sadlej, Joanna Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers |
title | Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers |
title_full | Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers |
title_fullStr | Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers |
title_full_unstemmed | Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers |
title_short | Phenylisoserine in the gas-phase and water: Ab initio studies on neutral and zwitterion conformers |
title_sort | phenylisoserine in the gas-phase and water: ab initio studies on neutral and zwitterion conformers |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3094660/ https://www.ncbi.nlm.nih.gov/pubmed/20623308 http://dx.doi.org/10.1007/s00894-010-0783-8 |
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