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Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb(2)ZnCl(4)
A combination of structure refinements, analysis of the superspace MEM density and interpretation of difference-Fourier maps has been used to characterize the incommensurate modulation of rubidium tetrachlorozincate, Rb(2)ZnCl(4), at a temperature of T = 196 K, close to the lock-in transition at T (...
Autores principales: | , , , , , , |
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Formato: | Texto |
Lenguaje: | English |
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International Union of Crystallography
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3098556/ https://www.ncbi.nlm.nih.gov/pubmed/21586828 http://dx.doi.org/10.1107/S0108768111013814 |
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author | Li, Liang Wölfel, Alexander Schönleber, Andreas Mondal, Swastik Schreurs, Antoine M. M. Kroon-Batenburg, Loes M. J. van Smaalen, Sander |
author_facet | Li, Liang Wölfel, Alexander Schönleber, Andreas Mondal, Swastik Schreurs, Antoine M. M. Kroon-Batenburg, Loes M. J. van Smaalen, Sander |
author_sort | Li, Liang |
collection | PubMed |
description | A combination of structure refinements, analysis of the superspace MEM density and interpretation of difference-Fourier maps has been used to characterize the incommensurate modulation of rubidium tetrachlorozincate, Rb(2)ZnCl(4), at a temperature of T = 196 K, close to the lock-in transition at T (lock-in) = 192 K. The modulation is found to consist of a combination of displacement modulation functions, modulated atomic displacement parameters (ADPs) and modulated third-order anharmonic ADPs. Up to fifth-order Fourier coefficients could be refined against diffraction data containing up to fifth-order satellite reflections. The center-of-charge of the atomic basins of the MEM density and the displacive modulation functions of the structure model provide equivalent descriptions of the displacive modulation. Modulations of the ADPs and anharmonic ADPs are visible in the MEM density, but extracting quantitative information about these modulations appears to be difficult. In the structure refinements the modulation parameters of the ADPs form a dependent set, and ad hoc restrictions had to be introduced in the refinements. It is suggested that modulated harmonic ADPs and modulated third-order anharmonic ADPs form an intrinsic part, however small, of incommensurately modulated structures in general. Refinements of alternate models with and without parameters for modulated ADPs lead to significant differences between the parameters of the displacement modulation in these two types of models, thus showing the modulation of ADPs to be important for a correct description of the displacive modulation. The resulting functions do not provide evidence for an interpretation of the modulation by a soliton model. |
format | Text |
id | pubmed-3098556 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-30985562011-06-01 Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb(2)ZnCl(4) Li, Liang Wölfel, Alexander Schönleber, Andreas Mondal, Swastik Schreurs, Antoine M. M. Kroon-Batenburg, Loes M. J. van Smaalen, Sander Acta Crystallogr B Research Papers A combination of structure refinements, analysis of the superspace MEM density and interpretation of difference-Fourier maps has been used to characterize the incommensurate modulation of rubidium tetrachlorozincate, Rb(2)ZnCl(4), at a temperature of T = 196 K, close to the lock-in transition at T (lock-in) = 192 K. The modulation is found to consist of a combination of displacement modulation functions, modulated atomic displacement parameters (ADPs) and modulated third-order anharmonic ADPs. Up to fifth-order Fourier coefficients could be refined against diffraction data containing up to fifth-order satellite reflections. The center-of-charge of the atomic basins of the MEM density and the displacive modulation functions of the structure model provide equivalent descriptions of the displacive modulation. Modulations of the ADPs and anharmonic ADPs are visible in the MEM density, but extracting quantitative information about these modulations appears to be difficult. In the structure refinements the modulation parameters of the ADPs form a dependent set, and ad hoc restrictions had to be introduced in the refinements. It is suggested that modulated harmonic ADPs and modulated third-order anharmonic ADPs form an intrinsic part, however small, of incommensurately modulated structures in general. Refinements of alternate models with and without parameters for modulated ADPs lead to significant differences between the parameters of the displacement modulation in these two types of models, thus showing the modulation of ADPs to be important for a correct description of the displacive modulation. The resulting functions do not provide evidence for an interpretation of the modulation by a soliton model. International Union of Crystallography 2011-06-01 2011-05-14 /pmc/articles/PMC3098556/ /pubmed/21586828 http://dx.doi.org/10.1107/S0108768111013814 Text en © Liang Li et al. 2011 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Li, Liang Wölfel, Alexander Schönleber, Andreas Mondal, Swastik Schreurs, Antoine M. M. Kroon-Batenburg, Loes M. J. van Smaalen, Sander Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb(2)ZnCl(4) |
title | Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb(2)ZnCl(4)
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title_full | Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb(2)ZnCl(4)
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title_fullStr | Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb(2)ZnCl(4)
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title_full_unstemmed | Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb(2)ZnCl(4)
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title_short | Modulated anharmonic ADPs are intrinsic to aperiodic crystals: a case study on incommensurate Rb(2)ZnCl(4)
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title_sort | modulated anharmonic adps are intrinsic to aperiodic crystals: a case study on incommensurate rb(2)zncl(4) |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3098556/ https://www.ncbi.nlm.nih.gov/pubmed/21586828 http://dx.doi.org/10.1107/S0108768111013814 |
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