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Failure Tolerance of Motif Structure in Biological Networks
Complex networks serve as generic models for many biological systems that have been shown to share a number of common structural properties such as power-law degree distribution and small-worldness. Real-world networks are composed of building blocks called motifs that are indeed specific subgraphs...
Autores principales: | , |
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Formato: | Texto |
Lenguaje: | English |
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Public Library of Science
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102726/ https://www.ncbi.nlm.nih.gov/pubmed/21637829 http://dx.doi.org/10.1371/journal.pone.0020512 |
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author | Mirzasoleiman, Baharan Jalili, Mahdi |
author_facet | Mirzasoleiman, Baharan Jalili, Mahdi |
author_sort | Mirzasoleiman, Baharan |
collection | PubMed |
description | Complex networks serve as generic models for many biological systems that have been shown to share a number of common structural properties such as power-law degree distribution and small-worldness. Real-world networks are composed of building blocks called motifs that are indeed specific subgraphs of (usually) small number of nodes. Network motifs are important in the functionality of complex networks, and the role of some motifs such as feed-forward loop in many biological networks has been heavily studied. On the other hand, many biological networks have shown some degrees of robustness in terms of their efficiency and connectedness against failures in their components. In this paper we investigated how random and systematic failures in the edges of biological networks influenced their motif structure. We considered two biological networks, namely, protein structure network and human brain functional network. Furthermore, we considered random failures as well as systematic failures based on different strategies for choosing candidate edges for removal. Failure in the edges tipping to high degree nodes had the most destructive role in the motif structure of the networks by decreasing their significance level, while removing edges that were connected to nodes with high values of betweenness centrality had the least effect on the significance profiles. In some cases, the latter caused increase in the significance levels of the motifs. |
format | Text |
id | pubmed-3102726 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-31027262011-06-02 Failure Tolerance of Motif Structure in Biological Networks Mirzasoleiman, Baharan Jalili, Mahdi PLoS One Research Article Complex networks serve as generic models for many biological systems that have been shown to share a number of common structural properties such as power-law degree distribution and small-worldness. Real-world networks are composed of building blocks called motifs that are indeed specific subgraphs of (usually) small number of nodes. Network motifs are important in the functionality of complex networks, and the role of some motifs such as feed-forward loop in many biological networks has been heavily studied. On the other hand, many biological networks have shown some degrees of robustness in terms of their efficiency and connectedness against failures in their components. In this paper we investigated how random and systematic failures in the edges of biological networks influenced their motif structure. We considered two biological networks, namely, protein structure network and human brain functional network. Furthermore, we considered random failures as well as systematic failures based on different strategies for choosing candidate edges for removal. Failure in the edges tipping to high degree nodes had the most destructive role in the motif structure of the networks by decreasing their significance level, while removing edges that were connected to nodes with high values of betweenness centrality had the least effect on the significance profiles. In some cases, the latter caused increase in the significance levels of the motifs. Public Library of Science 2011-05-26 /pmc/articles/PMC3102726/ /pubmed/21637829 http://dx.doi.org/10.1371/journal.pone.0020512 Text en Mirzasoleiman, Jalili. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Mirzasoleiman, Baharan Jalili, Mahdi Failure Tolerance of Motif Structure in Biological Networks |
title | Failure Tolerance of Motif Structure in Biological
Networks |
title_full | Failure Tolerance of Motif Structure in Biological
Networks |
title_fullStr | Failure Tolerance of Motif Structure in Biological
Networks |
title_full_unstemmed | Failure Tolerance of Motif Structure in Biological
Networks |
title_short | Failure Tolerance of Motif Structure in Biological
Networks |
title_sort | failure tolerance of motif structure in biological
networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102726/ https://www.ncbi.nlm.nih.gov/pubmed/21637829 http://dx.doi.org/10.1371/journal.pone.0020512 |
work_keys_str_mv | AT mirzasoleimanbaharan failuretoleranceofmotifstructureinbiologicalnetworks AT jalilimahdi failuretoleranceofmotifstructureinbiologicalnetworks |