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GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI

Gene activity is described by the time-series of discrete, stochastic mRNA production events. This transcriptional time-series exhibits intermittent, bursty behavior. One consequence of this temporal intricacy is that gene expression can be tuned by varying different features of the time-series. Wha...

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Autores principales: So, Lok-hang, Ghosh, Anandamohan, Zong, Chenghang, Sepúlveda, Leonardo A., Segev, Ronen, Golding, Ido
Formato: Texto
Lenguaje:English
Publicado: 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102781/
https://www.ncbi.nlm.nih.gov/pubmed/21532574
http://dx.doi.org/10.1038/ng.821
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author So, Lok-hang
Ghosh, Anandamohan
Zong, Chenghang
Sepúlveda, Leonardo A.
Segev, Ronen
Golding, Ido
author_facet So, Lok-hang
Ghosh, Anandamohan
Zong, Chenghang
Sepúlveda, Leonardo A.
Segev, Ronen
Golding, Ido
author_sort So, Lok-hang
collection PubMed
description Gene activity is described by the time-series of discrete, stochastic mRNA production events. This transcriptional time-series exhibits intermittent, bursty behavior. One consequence of this temporal intricacy is that gene expression can be tuned by varying different features of the time-series. What schemes for varying the transcriptional time-series are observed in the cell? Are the observed properties of these time-series optimized for cellular function? To address these questions, we characterize mRNA copy-number statistics at single-molecule resolution from multiple Escherichia coli promoters. We find that the degree of burstiness depends only on the gene expression level, while being independent of the details of gene regulation. The observed behavior is explained by the underlying variation in the duration of bursting events. Using information theory, we find that the properties of the transcriptional time series allow the cell to efficiently map the extracellular concentration of inducer molecules to intracellular levels of mRNA and proteins.
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spelling pubmed-31027812011-12-01 GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI So, Lok-hang Ghosh, Anandamohan Zong, Chenghang Sepúlveda, Leonardo A. Segev, Ronen Golding, Ido Nat Genet Article Gene activity is described by the time-series of discrete, stochastic mRNA production events. This transcriptional time-series exhibits intermittent, bursty behavior. One consequence of this temporal intricacy is that gene expression can be tuned by varying different features of the time-series. What schemes for varying the transcriptional time-series are observed in the cell? Are the observed properties of these time-series optimized for cellular function? To address these questions, we characterize mRNA copy-number statistics at single-molecule resolution from multiple Escherichia coli promoters. We find that the degree of burstiness depends only on the gene expression level, while being independent of the details of gene regulation. The observed behavior is explained by the underlying variation in the duration of bursting events. Using information theory, we find that the properties of the transcriptional time series allow the cell to efficiently map the extracellular concentration of inducer molecules to intracellular levels of mRNA and proteins. 2011-05-01 2011-06 /pmc/articles/PMC3102781/ /pubmed/21532574 http://dx.doi.org/10.1038/ng.821 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
So, Lok-hang
Ghosh, Anandamohan
Zong, Chenghang
Sepúlveda, Leonardo A.
Segev, Ronen
Golding, Ido
GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI
title GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI
title_full GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI
title_fullStr GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI
title_full_unstemmed GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI
title_short GENERAL PROPERTIES OF THE TRANSCRIPTIONAL TIME-SERIES IN ESCHERICHIA COLI
title_sort general properties of the transcriptional time-series in escherichia coli
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3102781/
https://www.ncbi.nlm.nih.gov/pubmed/21532574
http://dx.doi.org/10.1038/ng.821
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