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Growth-Rate Dependence Reveals Design Principles of Plasmid Copy Number Control

Genetic circuits in bacteria are intimately coupled to the cellular growth rate as many parameters of gene expression are growth-rate dependent. Growth-rate dependence can be particularly pronounced for genes on plasmids; therefore the native regulatory systems of a plasmid such as its replication c...

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Autor principal: Klumpp, Stefan
Formato: Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3103578/
https://www.ncbi.nlm.nih.gov/pubmed/21647376
http://dx.doi.org/10.1371/journal.pone.0020403
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author Klumpp, Stefan
author_facet Klumpp, Stefan
author_sort Klumpp, Stefan
collection PubMed
description Genetic circuits in bacteria are intimately coupled to the cellular growth rate as many parameters of gene expression are growth-rate dependent. Growth-rate dependence can be particularly pronounced for genes on plasmids; therefore the native regulatory systems of a plasmid such as its replication control system are characterized by growth-rate dependent parameters and regulator concentrations. This natural growth-rate dependent variation of regulator concentrations can be used for a quantitative analysis of the design of such regulatory systems. Here we analyze the growth-rate dependence of parameters of the copy number control system of ColE1-type plasmids in E. coli. This analysis allows us to infer the form of the control function and suggests that the Rom protein increases the sensitivity of control.
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spelling pubmed-31035782011-06-06 Growth-Rate Dependence Reveals Design Principles of Plasmid Copy Number Control Klumpp, Stefan PLoS One Research Article Genetic circuits in bacteria are intimately coupled to the cellular growth rate as many parameters of gene expression are growth-rate dependent. Growth-rate dependence can be particularly pronounced for genes on plasmids; therefore the native regulatory systems of a plasmid such as its replication control system are characterized by growth-rate dependent parameters and regulator concentrations. This natural growth-rate dependent variation of regulator concentrations can be used for a quantitative analysis of the design of such regulatory systems. Here we analyze the growth-rate dependence of parameters of the copy number control system of ColE1-type plasmids in E. coli. This analysis allows us to infer the form of the control function and suggests that the Rom protein increases the sensitivity of control. Public Library of Science 2011-05-27 /pmc/articles/PMC3103578/ /pubmed/21647376 http://dx.doi.org/10.1371/journal.pone.0020403 Text en Klumpp. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Klumpp, Stefan
Growth-Rate Dependence Reveals Design Principles of Plasmid Copy Number Control
title Growth-Rate Dependence Reveals Design Principles of Plasmid Copy Number Control
title_full Growth-Rate Dependence Reveals Design Principles of Plasmid Copy Number Control
title_fullStr Growth-Rate Dependence Reveals Design Principles of Plasmid Copy Number Control
title_full_unstemmed Growth-Rate Dependence Reveals Design Principles of Plasmid Copy Number Control
title_short Growth-Rate Dependence Reveals Design Principles of Plasmid Copy Number Control
title_sort growth-rate dependence reveals design principles of plasmid copy number control
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3103578/
https://www.ncbi.nlm.nih.gov/pubmed/21647376
http://dx.doi.org/10.1371/journal.pone.0020403
work_keys_str_mv AT klumppstefan growthratedependencerevealsdesignprinciplesofplasmidcopynumbercontrol