Cargando…

Using SNP array data to test for host genetic and breed effects on Porcine Reproductive and Respiratory Syndrome Viremia

BACKGROUND: The effect of breed on Porcine Reproductive and Respiratory Syndrome Viremia (PRRSV) was tested using data collected in 17 Italian commercial pig farms and 1096 genotypes obtained by the PorcineSNP60 BeadChip. A binomial logistic model was used to investigate the relationship between bre...

Descripción completa

Detalles Bibliográficos
Autores principales:	Biffani, Stefano, Botti, Sara, Bishop, Stephen C, Stella, Alessandra, Giuffra, Elisabetta
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3108223/ https://www.ncbi.nlm.nih.gov/pubmed/21645308 http://dx.doi.org/10.1186/1753-6561-5-S4-S28

Ejemplares similares

Genome wide association analysis of the 16th QTL- MAS Workshop dataset using the Random Forest machine learning approach
por: Minozzi, Giulietta, et al.
Publicado: (2014)

Identification of serum proteomic biomarkers for early porcine reproductive and respiratory syndrome (PRRS) infection
por: Genini, Sem, et al.
Publicado: (2012)

Effect of the prior distribution of SNP effects on the estimation of total breeding value
por: Nadaf, Javad, et al.
Publicado: (2012)

Genome-wide transcriptional response of primary alveolar macrophages following infection with porcine reproductive and respiratory syndrome virus
por: Genini, Sem, et al.
Publicado: (2008)

RNA-Sequence Analysis of Primary Alveolar Macrophages after In Vitro Infection with Porcine Reproductive and Respiratory Syndrome Virus Strains of Differing Virulence
por: Badaoui, Bouabid, et al.
Publicado: (2014)

Simultaneous QTL detection and genomic breeding value estimation using high density SNP chips
por: Veerkamp, Roel F, et al.
Publicado: (2010)

Comparison of methods for estimation of genetic covariance matrix from SNP or pedigree data utilised to predict breeding value
por: Mucha, Sebastian, et al.
Publicado: (2010)

Impact of genetic variation and geographic distribution of porcine reproductive and respiratory syndrome virus on infectivity and pig growth
por: Badaoui, Bouabid, et al.
Publicado: (2013)

Estimating genomic breeding values from the QTL-MAS Workshop Data using a single SNP and haplotype/IBD approach
por: Calus, Mario PL, et al.
Publicado: (2009)

Quantitative Analysis of Porcine Reproductive and Respiratory Syndrome (PRRS) Viremia Profiles from Experimental Infection: A Statistical Modelling Approach
por: Islam, Zeenath U., et al.
Publicado: (2013)

SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment
por: Lee, Jaehoon, et al.
Publicado: (2011)

Predicting haplotype carriers from SNP genotypes in Bos taurus through linear discriminant analysis
por: Biffani, Stefano, et al.
Publicado: (2015)

The miRNA-targeted transcriptome of porcine alveolar macrophages upon infection with Porcine Reproductive and Respiratory Syndrome Virus
por: Dhorne-Pollet, Sophie, et al.
Publicado: (2019)

snpTree - a web-server to identify and construct SNP trees from whole genome sequence data
por: Leekitcharoenphon, Pimlapas, et al.
Publicado: (2012)

Classification tree for detection of single-nucleotide polymorphism (SNP)-by-SNP interactions related to heart disease: Framingham Heart Study
por: Yao, Li, et al.
Publicado: (2009)

UASIS: Universal Automatic SNP Identification System
por: Poo, Danny C C, et al.
Publicado: (2011)

Macrophage-B Cell Interactions in the Inverted Porcine Lymph Node and Their Response to Porcine Reproductive and Respiratory Syndrome Virus
por: Bordet, Elise, et al.
Publicado: (2019)

Evaluating the accuracy of a functional SNP annotation system
por: Shen, Terry H, et al.
Publicado: (2009)

Using penalized regression to predict phenotype from SNP data
por: Cherlin, Svetlana, et al.
Publicado: (2018)

Methods for detecting methylation by SNP interaction in GAW20 simulation
por: Daw, E. Warwick, et al.
Publicado: (2018)

SNPConvert: SNP Array Standardization and Integration in Livestock Species
por: Nicolazzi, Ezequiel Luis, et al.
Publicado: (2016)

Viability of in-house datamarting approaches for population genetics analysis of SNP genotypes
por: Amigo, Jorge, et al.
Publicado: (2009)

Large-scale computational identification of regulatory SNPs with rSNP-MAPPER
por: Riva, Alberto
Publicado: (2012)

Host Genetics of Response to Porcine Reproductive and Respiratory Syndrome in Sows: Reproductive Performance
por: Hickmann, Felipe M. W., et al.
Publicado: (2021)

A strategy for QTL fine-mapping using a dense SNP map
por: Tarres, Joaquim, et al.
Publicado: (2009)

SNP set analysis for detecting disease association using exon sequence data
por: Wang, Ru, et al.
Publicado: (2011)

Tomato breeding in the genomics era: insights from a SNP array
por: Víquez-Zamora, Marcela, et al.
Publicado: (2013)

Oligonucleotide indexing of DNA barcodes: identification of tuna and other scombrid species in food products
por: Botti, Sara, et al.
Publicado: (2010)

SNP and gene networks construction and analysis from classification of copy number variations data
por: Liu, Yang, et al.
Publicado: (2011)

Across-line SNP association study for (innate) immune and behavioral traits in laying hens
por: van der Poel, Jan J, et al.
Publicado: (2011)

QTL detection for a medium density SNP panel: comparison of different LD and LA methods
por: Demeure, Olivier, et al.
Publicado: (2010)

Two combinatorial optimization problems for SNP discovery using base-specific cleavage and mass spectrometry
por: Chen, Xin, et al.
Publicado: (2012)

Estimation of genomic breeding values using the Horseshoe prior
por: Pong-Wong, Ricardo
Publicado: (2014)

Immunity against a Japanese local strain of porcine reproductive and respiratory syndrome virus decreases viremia and symptoms of a highly pathogenic strain
por: Iseki, Hiroshi, et al.
Publicado: (2021)

SNP@Promoter: a database of human SNPs (Single Nucleotide Polymorphisms) within the putative promoter regions
por: Kim, Byoung-Chul, et al.
Publicado: (2008)

Comparison of SNP-based and gene-based association studies in detecting rare variants using unrelated individuals
por: Tong, Liping, et al.
Publicado: (2011)

MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads
por: Bao, Hua, et al.
Publicado: (2009)

iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies
por: Piriyapongsa, Jittima, et al.
Publicado: (2012)

Evolution of orthologous tandemly arrayed gene clusters
por: Tremblay Savard, Olivier, et al.
Publicado: (2011)

Autophagy sustains the replication of porcine reproductive and respiratory virus in host cells
por: Liu, Qinghao, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_b2thrfkf4jpksc0nir4gbv0dbg