Cargando…
Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))
Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing abil...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2011
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111988/ https://www.ncbi.nlm.nih.gov/pubmed/21677850 http://dx.doi.org/10.4056/sigs.1463589 |
_version_ | 1782205683342508032 |
---|---|
author | Zeytun, Ahmet Sikorski, Johannes Nolan, Matt Lapidus, Alla Lucas, Susan Han, James Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Ngatchou-Djao, Olivier D. Land, Miriam Hauser, Loren Jeffries, Cynthia D. Han, Cliff Detter, John C. Übler, Susanne Rohde, Manfred Tindall, Brian J. Göker, Markus Wirth, Reinhard Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. |
author_facet | Zeytun, Ahmet Sikorski, Johannes Nolan, Matt Lapidus, Alla Lucas, Susan Han, James Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Ngatchou-Djao, Olivier D. Land, Miriam Hauser, Loren Jeffries, Cynthia D. Han, Cliff Detter, John C. Übler, Susanne Rohde, Manfred Tindall, Brian J. Göker, Markus Wirth, Reinhard Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. |
author_sort | Zeytun, Ahmet |
collection | PubMed |
description | Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO(2) via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Online Article Text |
id | pubmed-3111988 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-31119882011-06-14 Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)) Zeytun, Ahmet Sikorski, Johannes Nolan, Matt Lapidus, Alla Lucas, Susan Han, James Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Ngatchou-Djao, Olivier D. Land, Miriam Hauser, Loren Jeffries, Cynthia D. Han, Cliff Detter, John C. Übler, Susanne Rohde, Manfred Tindall, Brian J. Göker, Markus Wirth, Reinhard Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO(2) via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2011-04-29 /pmc/articles/PMC3111988/ /pubmed/21677850 http://dx.doi.org/10.4056/sigs.1463589 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Zeytun, Ahmet Sikorski, Johannes Nolan, Matt Lapidus, Alla Lucas, Susan Han, James Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Ngatchou-Djao, Olivier D. Land, Miriam Hauser, Loren Jeffries, Cynthia D. Han, Cliff Detter, John C. Übler, Susanne Rohde, Manfred Tindall, Brian J. Göker, Markus Wirth, Reinhard Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)) |
title | Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)) |
title_full | Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)) |
title_fullStr | Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)) |
title_full_unstemmed | Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)) |
title_short | Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)) |
title_sort | complete genome sequence of hydrogenobacter thermophilus type strain (tk-6(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111988/ https://www.ncbi.nlm.nih.gov/pubmed/21677850 http://dx.doi.org/10.4056/sigs.1463589 |
work_keys_str_mv | AT zeytunahmet completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT sikorskijohannes completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT nolanmatt completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT lapidusalla completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT lucassusan completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT hanjames completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT ticehope completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT chengjanfang completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT tapiaroxanne completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT goodwinlynne completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT pitlucksam completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT liolioskonstantinos completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT ivanovanatalia completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT mavromatiskonstantinos completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT mikhailovanatalia completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT ovchinnikovagalina completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT patiamrita completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT chenamy completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT palaniappankrishna completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT ngatchoudjaoolivierd completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT landmiriam completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT hauserloren completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT jeffriescynthiad completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT hancliff completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT detterjohnc completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT ublersusanne completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT rohdemanfred completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT tindallbrianj completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT gokermarkus completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT wirthreinhard completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT woyketanja completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT bristowjames completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT eisenjonathana completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT markowitzvictor completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT hugenholtzphilip completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT klenkhanspeter completegenomesequenceofhydrogenobacterthermophilustypestraintk6t AT kyrpidesnikosc completegenomesequenceofhydrogenobacterthermophilustypestraintk6t |