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Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))

Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing abil...

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Autores principales: Zeytun, Ahmet, Sikorski, Johannes, Nolan, Matt, Lapidus, Alla, Lucas, Susan, Han, James, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxanne, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Ivanova, Natalia, Mavromatis, Konstantinos, Mikhailova, Natalia, Ovchinnikova, Galina, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Ngatchou-Djao, Olivier D., Land, Miriam, Hauser, Loren, Jeffries, Cynthia D., Han, Cliff, Detter, John C., Übler, Susanne, Rohde, Manfred, Tindall, Brian J., Göker, Markus, Wirth, Reinhard, Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter, Kyrpides, Nikos C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111988/
https://www.ncbi.nlm.nih.gov/pubmed/21677850
http://dx.doi.org/10.4056/sigs.1463589
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author Zeytun, Ahmet
Sikorski, Johannes
Nolan, Matt
Lapidus, Alla
Lucas, Susan
Han, James
Tice, Hope
Cheng, Jan-Fang
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Ngatchou-Djao, Olivier D.
Land, Miriam
Hauser, Loren
Jeffries, Cynthia D.
Han, Cliff
Detter, John C.
Übler, Susanne
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Wirth, Reinhard
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_facet Zeytun, Ahmet
Sikorski, Johannes
Nolan, Matt
Lapidus, Alla
Lucas, Susan
Han, James
Tice, Hope
Cheng, Jan-Fang
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Ngatchou-Djao, Olivier D.
Land, Miriam
Hauser, Loren
Jeffries, Cynthia D.
Han, Cliff
Detter, John C.
Übler, Susanne
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Wirth, Reinhard
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_sort Zeytun, Ahmet
collection PubMed
description Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO(2) via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-31119882011-06-14 Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T)) Zeytun, Ahmet Sikorski, Johannes Nolan, Matt Lapidus, Alla Lucas, Susan Han, James Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Ovchinnikova, Galina Pati, Amrita Chen, Amy Palaniappan, Krishna Ngatchou-Djao, Olivier D. Land, Miriam Hauser, Loren Jeffries, Cynthia D. Han, Cliff Detter, John C. Übler, Susanne Rohde, Manfred Tindall, Brian J. Göker, Markus Wirth, Reinhard Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. Strain TK-6(T) is of interest because of the unusually efficient hydrogen-oxidizing ability of this strain, which results in a faster generation time compared to other autotrophs. It is also able to grow anaerobically using nitrate as an electron acceptor when molecular hydrogen is used as the energy source, and able to aerobically fix CO(2) via the reductive tricarboxylic acid cycle. This is the fifth completed genome sequence in the family Aquificaceae, and the second genome sequence determined from a strain derived from the original isolate. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 1,742,932 bp long genome with its 1,899 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2011-04-29 /pmc/articles/PMC3111988/ /pubmed/21677850 http://dx.doi.org/10.4056/sigs.1463589 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Zeytun, Ahmet
Sikorski, Johannes
Nolan, Matt
Lapidus, Alla
Lucas, Susan
Han, James
Tice, Hope
Cheng, Jan-Fang
Tapia, Roxanne
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Ivanova, Natalia
Mavromatis, Konstantinos
Mikhailova, Natalia
Ovchinnikova, Galina
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Ngatchou-Djao, Olivier D.
Land, Miriam
Hauser, Loren
Jeffries, Cynthia D.
Han, Cliff
Detter, John C.
Übler, Susanne
Rohde, Manfred
Tindall, Brian J.
Göker, Markus
Wirth, Reinhard
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))
title Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))
title_full Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))
title_fullStr Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))
title_full_unstemmed Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))
title_short Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6(T))
title_sort complete genome sequence of hydrogenobacter thermophilus type strain (tk-6(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3111988/
https://www.ncbi.nlm.nih.gov/pubmed/21677850
http://dx.doi.org/10.4056/sigs.1463589
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