Cargando…

HTPheno: An image analysis pipeline for high-throughput plant phenotyping

BACKGROUND: In the last few years high-throughput analysis methods have become state-of-the-art in the life sciences. One of the latest developments is automated greenhouse systems for high-throughput plant phenotyping. Such systems allow the non-destructive screening of plants over a period of time...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hartmann, Anja, Czauderna, Tobias, Hoffmann, Roberto, Stein, Nils, Schreiber, Falk
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3113939/ https://www.ncbi.nlm.nih.gov/pubmed/21569390 http://dx.doi.org/10.1186/1471-2105-12-148

Ejemplares similares

VANTED v2: a framework for systems biology applications
por: Rohn, Hendrik, et al.
Publicado: (2012)

High-throughput bioinformatics with the Cyrille2 pipeline system
por: Fiers, Mark WEJ, et al.
Publicado: (2008)

SNP-PHAGE – High throughput SNP discovery pipeline
por: Matukumalli, Lakshmi K, et al.
Publicado: (2006)

A high-throughput pipeline for the design of real-time PCR signatures
por: Vijaya Satya, Ravi, et al.
Publicado: (2010)

Maize-IAS: a maize image analysis software using deep learning for high-throughput plant phenotyping
por: Zhou, Shuo, et al.
Publicado: (2021)

NeoPredPipe: high-throughput neoantigen prediction and recognition potential pipeline
por: Schenck, Ryan O., et al.
Publicado: (2019)

Computer aided data acquisition tool for high-throughput phenotyping of plant populations
por: Vankadavath, Raju Naik, et al.
Publicado: (2009)

SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read
por: Falgueras, Juan, et al.
Publicado: (2010)

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites
por: Spinozzi, Giulio, et al.
Publicado: (2017)

MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data
por: Caboche, Ségolène, et al.
Publicado: (2017)

HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data
por: Yan, Huihuang, et al.
Publicado: (2014)

mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development
por: Lv, Yuanda, et al.
Publicado: (2016)

InsertionMapper: a pipeline tool for the identification of targeted sequences from multidimensional high throughput sequencing data
por: Xiong, Wenwei, et al.
Publicado: (2013)

FluxMap: A VANTED add-on for the visual exploration of flux distributions in biological networks
por: Rohn, Hendrik, et al.
Publicado: (2012)

The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes
por: Estill, James C, et al.
Publicado: (2009)

iMir: An integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq
por: Giurato, Giorgio, et al.
Publicado: (2013)

The HTS barcode checker pipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data
por: Lammers, Youri, et al.
Publicado: (2014)

LotuS: an efficient and user-friendly OTU processing pipeline
por: Hildebrand, Falk, et al.
Publicado: (2014)

Bioinformatic pipelines in Python with Leaf
por: Napolitano, Francesco, et al.
Publicado: (2013)

VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology
por: Rizwan, Muhammad, et al.
Publicado: (2017)

PhyloHerb: A high‐throughput phylogenomic pipeline for processing genome skimming data
por: Cai, Liming, et al.
Publicado: (2022)

PmiRDiscVali: an integrated pipeline for plant microRNA discovery and validation
por: Yu, Dongliang, et al.
Publicado: (2019)

RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants
por: Li, Pingchuan, et al.
Publicado: (2016)

OptPipe - a pipeline for optimizing metabolic engineering targets
por: Hartmann, András, et al.
Publicado: (2017)

GOgetter: A pipeline for summarizing and visualizing GO slim annotations for plant genetic data
por: Sessa, Emily B., et al.
Publicado: (2023)

Gdaphen, R pipeline to identify the most important qualitative and quantitative predictor variables from phenotypic data
por: Muñiz Moreno, Maria del Mar, et al.
Publicado: (2023)

ConservedPrimers 2.0: A high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery
por: You, Frank M, et al.
Publicado: (2009)

InstantDL: an easy-to-use deep learning pipeline for image segmentation and classification
por: Waibel, Dominik Jens Elias, et al.
Publicado: (2021)

CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes
por: Vassilieff, Héléna, et al.
Publicado: (2022)

GiA Roots: software for the high throughput analysis of plant root system architecture
por: Galkovskyi, Taras, et al.
Publicado: (2012)

Orthonome – a new pipeline for predicting high quality orthologue gene sets applicable to complete and draft genomes
por: Rane, Rahul V., et al.
Publicado: (2017)

ToTem: a tool for variant calling pipeline optimization
por: Tom, Nikola, et al.
Publicado: (2018)

DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data
por: Nettling, Martin, et al.
Publicado: (2014)

mycelyso – high-throughput analysis of Streptomyces mycelium live cell imaging data
por: Sachs, Christian Carsten, et al.
Publicado: (2019)

Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool
por: Shelton, Jennifer M., et al.
Publicado: (2015)

PRAP: Pan Resistome analysis pipeline
por: He, Yichen, et al.
Publicado: (2020)

ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom
por: Moore, Marten, et al.
Publicado: (2020)

AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
por: Shahryary, Yadollah, et al.
Publicado: (2020)

CellProfiler Tracer: exploring and validating high-throughput, time-lapse microscopy image data
por: Bray, Mark-Anthony, et al.
Publicado: (2015)

Tilescope: online analysis pipeline for high-density tiling microarray data
por: Zhang, Zhengdong D, et al.
Publicado: (2007)

Cannot write session to /tmp/vufind_sessions/sess_gc2jtvbh333nuv9co53qa8dkgp