Cargando…

Potential pitfalls of modelling ribosomal RNA data in phylogenetic tree reconstruction: Evidence from case studies in the Metazoa

BACKGROUND: Failure to account for covariation patterns in helical regions of ribosomal RNA (rRNA) genes has the potential to misdirect the estimation of the phylogenetic signal of the data. Furthermore, the extremes of length variation among taxa, combined with regional substitution rate variation...

Descripción completa

Detalles Bibliográficos
Autores principales:	Letsch , Harald O, Kjer, Karl M
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3123606/ https://www.ncbi.nlm.nih.gov/pubmed/21619604 http://dx.doi.org/10.1186/1471-2148-11-146

Ejemplares similares

Gene gain and loss across the Metazoa Tree of Life
por: Fernández, Rosa, et al.
Publicado: (2020)

The Evolution of the Metazoa
por: Lentz, Thomas L.
Publicado: (1964)

New Insights on the Sialidase Protein Family Revealed by a Phylogenetic Analysis in Metazoa
por: Giacopuzzi, Edoardo, et al.
Publicado: (2012)

Phylogenetic analysis of the SINA/SIAH ubiquitin E3 ligase family in Metazoa
por: Pepper, Ian J., et al.
Publicado: (2017)

Phylogenetic analyses of 5-hydroxytryptamine 3 (5-HT(3)) receptors in Metazoa
por: Rao, Santosh T. R. B., et al.
Publicado: (2023)

Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa
por: Borowiec, Marek L., et al.
Publicado: (2015)

Microbial Metazoa Are Microbes Too
por: Bik, Holly M.
Publicado: (2019)

Identifying Single Copy Orthologs in Metazoa
por: Creevey, Christopher J., et al.
Publicado: (2011)

The rhizome of life: what about metazoa?
por: Ramulu, Hemalatha G., et al.
Publicado: (2012)

Mechanisms of transcription factor evolution in Metazoa
por: Schmitz, Jonathan F., et al.
Publicado: (2016)

Evolution of Protein Domain Repeats in Metazoa
por: Schüler, Andreas, et al.
Publicado: (2016)

ppGpp functions as an alarmone in metazoa
por: Ito, Doshun, et al.
Publicado: (2020)

Evolution of miRNA Tailing by 3′ Terminal Uridylyl Transferases in Metazoa
por: Modepalli, Vengamanaidu, et al.
Publicado: (2017)

Evolution of secretin family GPCR members in the metazoa
por: Cardoso, João CR, et al.
Publicado: (2006)

The first metazoa living in permanently anoxic conditions
por: Danovaro, Roberto, et al.
Publicado: (2010)

Minimum variance rooting of phylogenetic trees and implications for species tree reconstruction
por: Mai, Uyen, et al.
Publicado: (2017)

PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees
por: Fang, Yang, et al.
Publicado: (2019)

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees
por: Keller, Alexander, et al.
Publicado: (2010)

Reconstruction of Ribosomal RNA Genes from Metagenomic Data
por: Fan, Lu, et al.
Publicado: (2012)

Molecular evolution of rDNA in early diverging Metazoa: First comparative analysis and phylogenetic application of complete SSU rRNA secondary structures in Porifera
por: Voigt, Oliver, et al.
Publicado: (2008)

Massive A-to-I RNA editing is common across the Metazoa and correlates with dsRNA abundance
por: Porath, Hagit T., et al.
Publicado: (2017)

Molecular evolution of the polyamine oxidase gene family in Metazoa
por: Polticelli, Fabio, et al.
Publicado: (2012)

Of Retinoids and Organotins: The Evolution of the Retinoid X Receptor in Metazoa
por: Fonseca, Elza, et al.
Publicado: (2020)

Convergent evolution of venom gland transcriptomes across Metazoa
por: Zancolli, Giulia, et al.
Publicado: (2021)

Pattern-Based Phylogenetic Distance Estimation and Tree Reconstruction
por: Höhl, Michael, et al.
Publicado: (2007)

The C-terminal α–α superhelix of Pat is required for mRNA decapping in metazoa
por: Braun, Joerg E, et al.
Publicado: (2010)

Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation
por: Kondrashov, Fyodor A, et al.
Publicado: (2006)

Available data do not rule out Ctenophora as the sister group to all other Metazoa
por: Whelan, Nathan V., et al.
Publicado: (2023)

The probability distribution of the ancestral population size conditioned on the reconstructed phylogenetic tree with occurrence data
por: Manceau, Marc, et al.
Publicado: (2021)

Non-random retention of protein-coding overlapping genes in Metazoa
por: Soldà, Giulia, et al.
Publicado: (2008)

HPat provides a link between deadenylation and decapping in metazoa
por: Haas, Gabrielle, et al.
Publicado: (2010)

Identification, distribution and molecular evolution of the pacifastin gene family in Metazoa
por: Breugelmans, Bert, et al.
Publicado: (2009)

Regulated aggregative multicellularity in a close unicellular relative of metazoa
por: Sebé-Pedrós, Arnau, et al.
Publicado: (2013)

Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa
por: Lokits, A. D., et al.
Publicado: (2018)

Reply to: Available data do not rule out Ctenophora as the sister group to all other Metazoa
por: Redmond, Anthony K., et al.
Publicado: (2023)

The Hymenopteran Tree of Life: Evidence from Protein-Coding Genes and Objectively Aligned Ribosomal Data
por: Klopfstein, Seraina, et al.
Publicado: (2013)

Biochemical and phylogenetic networks-II: X-trees and phylogenetic trees
por: Rajan, R. Sundara, et al.
Publicado: (2021)

Comprehensive analysis of the base composition around the transcription start site in Metazoa
por: Aerts, Stein, et al.
Publicado: (2004)

Endosymbiotic Calcifying Bacteria: A New Cue to the Origin of Calcification in Metazoa?
por: Uriz, Maria J, et al.
Publicado: (2012)

The Mitochondrial Genomes of a Myxozoan Genus Kudoa Are Extremely Divergent in Metazoa
por: Takeuchi, Fumihiko, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_1trgt6bc2e99b10i7pe91c1866