Cargando…

Identifier mapping performance for integrating transcriptomics and proteomics experimental results

BACKGROUND: Studies integrating transcriptomic data with proteomic data can illuminate the proteome more clearly than either separately. Integromic studies can deepen understanding of the dynamic complex regulatory relationship between the transcriptome and the proteome. Integrating these data dicta...

Descripción completa

Detalles Bibliográficos
Autores principales:	Day, Roger S, McDade, Kevin K, Chandran, Uma R, Lisovich, Alex, Conrads, Thomas P, Hood, Brian L, Kolli, VS Kumar, Kirchner, David, Litzi, Traci, Maxwell, G Larry
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3124437/ https://www.ncbi.nlm.nih.gov/pubmed/21619611 http://dx.doi.org/10.1186/1471-2105-12-213

Ejemplares similares

A decision theory paradigm for evaluating identifier mapping and filtering methods using data integration
por: Day, Roger S, et al.
Publicado: (2013)

Improving Cancer Gene Expression Data Quality through a TCGA Data-Driven Evaluation of Identifier Filtering
por: McDade, Kevin K., et al.
Publicado: (2015)

Cytomegalovirus antibodies in dried blood spots: a minimally invasive method for assessing stress, immune function, and aging
por: Dowd, Jennifer B, et al.
Publicado: (2011)

Gene Expression Analysis of Early Stage Endometrial Cancers Reveals Unique Transcripts Associated with Grade and Histology but Not Depth of Invasion
por: Risinger, John I., et al.
Publicado: (2013)

Analysis of PSPHL as a Candidate Gene Influencing the Racial Disparity in Endometrial Cancer
por: Allard, Jay E., et al.
Publicado: (2012)

Extensive three-dimensional intratumor proteomic heterogeneity revealed by multiregion sampling in high-grade serous ovarian tumor specimens
por: Hunt, Allison L., et al.
Publicado: (2021)

Planning clinically relevant biomarker validation studies using the “number needed to treat” concept
por: Day, Roger S.
Publicado: (2016)

How does facilitation in healthcare work? Using mechanism mapping to illuminate the black box of a meta-implementation strategy
por: Kilbourne, Amy M., et al.
Publicado: (2023)

NUAK1 (ARK5) Is Associated with Poor Prognosis in Ovarian Cancer
por: Phippen, Neil T., et al.
Publicado: (2016)

A transcriptome map of perennial ryegrass (Lolium perenne L.)
por: Studer, Bruno, et al.
Publicado: (2012)

Brain proteomic atlas of alcohol use disorder in adult males
por: Teng, Pang-ning, et al.
Publicado: (2023)

Proteomic alterations associated with residual disease in neoadjuvant chemotherapy treated ovarian cancer tissues
por: Penick, Emily R., et al.
Publicado: (2022)

A novel SNP analysis method to detect copy number alterations with an unbiased reference signal directly from tumor samples
por: Lisovich, Alex, et al.
Publicado: (2011)

Genetic validation of whole-transcriptome sequencing for mapping expression affected by cis-regulatory variation
por: Babak, Tomas, et al.
Publicado: (2010)

Assessing the hodgepodge of non-mapped reads in bacterial transcriptomes: real or artifactual RNA chimeras?
por: Lloréns-Rico, Verónica, et al.
Publicado: (2014)

Valvular Aortic Stenosis: A Proteomic Insight
por: Gil-Dones, Felix, et al.
Publicado: (2010)

Proteomic sample preparation for blast wound characterization
por: Chromy, Brett A, et al.
Publicado: (2014)

Pathway-based Biomarkers for Breast Cancer in Proteomics
por: Zhang, Fan, et al.
Publicado: (2015)

A novel applicability domain technique for mapping predictive reliability across the chemical space of a QSAR: reliability-density neighbourhood
por: Aniceto, Natália, et al.
Publicado: (2016)

Can museum egg specimens be used for proteomic analyses?
por: Portugal, Steven J, et al.
Publicado: (2010)

An Optimal Protocol to Analyze the Rat Spinal Cord Proteome
por: Gil-Dones, F., et al.
Publicado: (2009)

A computational model for sex-specific genetic architecture of complex traits in humans: Implications for mapping pain sensitivity
por: Wang, Chenguang, et al.
Publicado: (2008)

Development and standardization of multiplexed antibody microarrays for use in quantitative proteomics
por: Perlee, LT, et al.
Publicado: (2004)

A proteomic approach for the identification of novel lysine methyltransferase substrates
por: Levy, Dan, et al.
Publicado: (2011)

An optimised method for the proteomic profiling of full thickness human skin
por: Bliss, Emily, et al.
Publicado: (2016)

Proteogenomic landscape of uterine leiomyomas from hereditary leiomyomatosis and renal cell cancer patients
por: Bateman, Nicholas W., et al.
Publicado: (2021)

Systematic mapping of checklists for assessing transferability
por: Munthe-Kaas, Heather, et al.
Publicado: (2019)

Mapping reviews, scoping reviews, and evidence and gap maps (EGMs): the same but different— the “Big Picture” review family
por: Campbell, Fiona, et al.
Publicado: (2023)

Transcriptomics Signature from Next-Generation Sequencing Data Reveals New Transcriptomic Biomarkers Related to Prostate Cancer
por: Alkhateeb, Abedalrhman, et al.
Publicado: (2019)

Fully automated synthesis of (phospho)peptide arrays in microtiter plate wells provides efficient access to protein tyrosine kinase characterization
por: Saxinger, Carl, et al.
Publicado: (2005)

Proteome alteration induced by hTERT transfection of human fibroblast cells
por: Mazzucchelli, Gabriel D, et al.
Publicado: (2008)

Enhanced detection method for corneal protein identification using shotgun proteomics
por: Meade, Mitchell L, et al.
Publicado: (2009)

Comparison of in-gel and in-solution proteolysis in the proteome profiling of organ perfusion solutions
por: Snashall, Corinna M., et al.
Publicado: (2023)

Use of carbon-13 as a population marker for Anopheles arabiensis in a sterile insect technique (SIT) context
por: Hood-Nowotny, Rebecca, et al.
Publicado: (2006)

Neuronal clusterin expression is associated with cognitive protection in amyotrophic lateral sclerosis
por: Gregory, J. M., et al.
Publicado: (2019)

Legionella and the Prevention of Legionellosis
por: McDade, Joseph E.
Publicado: (2008)

Segue: Brief summaries of articles on pertinent emerging issues published elsewhere.
por: McDade, Joseph E.
Publicado: (2004)

Segue: Brief summaries of articles on pertinent emerging issues published elsewhere.
por: McDade, Joseph E.
Publicado: (2004)

Segue: Brief summaries of articles on pertinent emerging issues published elsewhere.
por: McDade, Joseph E.
Publicado: (2004)

Addressing the potential threat of bioterrorism--value added to an improved public health infrastructure.
por: McDade, J E
Publicado: (1999)

Cannot write session to /tmp/vufind_sessions/sess_760ecs834fe3huruvvaioscb7d