Cargando…

Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi

BACKGROUND: Noncoding RNA (ncRNA) has been recognized as an important regulator of gene expression networks in Bacteria and Eucaryota. Little is known about ncRNA in thermococcal archaea except for the eukaryotic-like C/D and H/ACA modification guide RNAs. RESULTS: Using a combination of in silico a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Phok, Kounthéa, Moisan, Annick, Rinaldi, Dana, Brucato, Nicolas, Carpousis, Agamemnon J, Gaspin, Christine, Clouet-d'Orval, Béatrice
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3124441/ https://www.ncbi.nlm.nih.gov/pubmed/21668986 http://dx.doi.org/10.1186/1471-2164-12-312

Ejemplares similares

The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn
por: Nolivos, Sophie, et al.
Publicado: (2005)

Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs
por: Muller, Sébastien, et al.
Publicado: (2008)

Archaeal β-CASP ribonucleases of the aCPSF1 family are orthologs of the eukaryal CPSF-73 factor
por: Phung, Duy Khanh, et al.
Publicado: (2013)

Role of aIF1 in Pyrococcus abyssi translation initiation
por: Monestier, Auriane, et al.
Publicado: (2018)

Comparative Analysis of Barophily-Related Amino Acid Content in Protein Domains of Pyrococcus abyssi and Pyrococcus furiosus
por: Yafremava, Liudmila S., et al.
Publicado: (2013)

Electrogenic Cation Binding in the Electroneutral Na(+)/H(+) Antiporter of Pyrococcus abyssi
por: Călinescu, Octavian, et al.
Publicado: (2016)

RNA at 92°C: The non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi
por: Toffano-Nioche, Claire, et al.
Publicado: (2013)

Structure of an octameric form of the minichromosome maintenance protein from the archaeon Pyrococcus abyssi
por: Cannone, Giuseppe, et al.
Publicado: (2017)

Expression, purification and structural analysis of the Pyrococcus abyssi RNA binding protein PAB1135
por: Luz, Juliana S, et al.
Publicado: (2010)

Replication slippage of the thermophilic DNA polymerases B and D from the Euryarchaeota Pyrococcus abyssi
por: Castillo-Lizardo, Melissa, et al.
Publicado: (2014)

An Extended Network of Genomic Maintenance in the Archaeon Pyrococcus abyssi Highlights Unexpected Associations between Eucaryotic Homologs
por: Pluchon, Pierre-François, et al.
Publicado: (2013)

Physical and functional interplay between PCNA DNA clamp and Mre11–Rad50 complex from the archaeon Pyrococcus furiosus
por: Hogrel, Gaëlle, et al.
Publicado: (2018)

Crystal Structure of PAV1-137: A Protein from the Virus PAV1 That Infects Pyrococcus abyssi
por: Leulliot, N., et al.
Publicado: (2013)

Insights into the hyperthermostability and unusual region-specificity of archaeal Pyrococcus abyssi tRNA m(1)A57/58 methyltransferase
por: Guelorget, Amandine, et al.
Publicado: (2010)

The chromatin landscape of the euryarchaeon Haloferax volcanii
por: Marinov, Georgi K., et al.
Publicado: (2023)

The crystal structure of Pyrococcus abyssi tRNA (uracil-54, C5)-methyltransferase provides insights into its tRNA specificity
por: Walbott, Hélène, et al.
Publicado: (2008)

Programmable sequence-specific click-labeling of RNA using archaeal box C/D RNP methyltransferases
por: Tomkuvienė, Miglė, et al.
Publicado: (2012)

Characterization of the Cdc6 Homologues from the Euryarchaeon Thermoplasma acidophilum
por: Haugland, Gyri Teien, et al.
Publicado: (2008)

Characterization of the MCM homohexamer from the thermoacidophilic euryarchaeon Picrophilus torridus
por: Goswami, Kasturi, et al.
Publicado: (2015)

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria
por: Cerutti, Franck, et al.
Publicado: (2017)

Archaeal fibrillarin–Nop5 heterodimer 2′-O-methylates RNA independently of the C/D guide RNP particle
por: Tomkuvienė, Miglė, et al.
Publicado: (2017)

Noncoding RNAs
por: Hardikar, Anandwardhan A., et al.
Publicado: (2012)

Decoding Noncoding RNAs: Role of MicroRNAs and Long Noncoding RNAs in Ocular Neovascularization
por: Zhang, Yan, et al.
Publicado: (2017)

The Shine-Dalgarno sequence of riboswitch-regulated single mRNAs shows ligand-dependent accessibility bursts
por: Rinaldi, Arlie J., et al.
Publicado: (2016)

Noncoding RNAs and cancer
por: Yogev, Ohad, et al.
Publicado: (2011)

Noncoding RNAs and Cancer
por: Naeini, Mozhgan Moslemi, et al.
Publicado: (2009)

Noncoding RNAs in disease
por: Lekka, Evangelia, et al.
Publicado: (2018)

Noncoding RNAs in Hypertension
por: Jusic, Amela, et al.
Publicado: (2019)

Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5′-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi
por: Ishikawa, Ken, et al.
Publicado: (2005)

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation
por: Geissmann, Thomas, et al.
Publicado: (2009)

Long Noncoding RNAs and Circular RNAs in Autoimmune Diseases
por: Lodde, Valeria, et al.
Publicado: (2020)

Long noncoding RNAs (lncRNAs) in human lymphomas
por: Gholami, Ali, et al.
Publicado: (2021)

Polyribosome-Dependent Clustering of Membrane-Anchored RNA Degradosomes To Form Sites of mRNA Degradation in Escherichia coli
por: Hamouche, Lina, et al.
Publicado: (2021)

Ribosomal RNA degradation induced by the bacterial RNA polymerase inhibitor rifampicin
por: Hamouche, Lina, et al.
Publicado: (2021)

Noncoding RNAs in Cancer Medicine
por: Cerchia, Laura, et al.
Publicado: (2006)

The Genetic Signatures of Noncoding RNAs
por: Mattick, John S.
Publicado: (2009)

Panning for Long Noncoding RNAs
por: Zhu, Shanshan, et al.
Publicado: (2013)

Noncoding RNAs in Neurodegenerative Diseases
por: Rege, Shraddha D., et al.
Publicado: (2013)

Long noncoding RNAs and neuroblastoma
por: Pandey, Gaurav Kumar, et al.
Publicado: (2015)

Long noncoding RNAs in hematopoiesis
por: Zhang, Xu, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_hs5ui0150pnia9uc060jcopmdf