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Isolation, identification and computational studies on Pseudomonas aeruginosa sp. strain MPC1 in tannery effluent

A study about isolation, identification and analysis of bacteria in waste water. Here the tannery effluent used as a sample for the entire analysis. A bacterial strain, designated MPC1 was isolated from a waste water sample collected from tannery effluent, Trichy, India and identified using a molecu...

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Autores principales: Senthil, Renganathan, Angel, Kanagamani Jini, Malathi, Ravi, Venkatesan, Dhanapal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3124803/
https://www.ncbi.nlm.nih.gov/pubmed/21738311
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author Senthil, Renganathan
Angel, Kanagamani Jini
Malathi, Ravi
Venkatesan, Dhanapal
author_facet Senthil, Renganathan
Angel, Kanagamani Jini
Malathi, Ravi
Venkatesan, Dhanapal
author_sort Senthil, Renganathan
collection PubMed
description A study about isolation, identification and analysis of bacteria in waste water. Here the tannery effluent used as a sample for the entire analysis. A bacterial strain, designated MPC1 was isolated from a waste water sample collected from tannery effluent, Trichy, India and identified using a molecular approach. On the basis of the bacterial 16s rRNA gene sequence phylogeny and comparison of this gene sequence with sequence in RNA sequence database, it is considered that isolate is closely related to members of the Pseudomonas aeruginosa Sp. Phylogenetic and molecular evolutionary analyses were conducted using MEGA. Identification of regulatory elements and Transcription Factor with their binding sites in 16S rRNA gene of Pseudomonas aeruginosa mpc1 was performed using BPROM tool. The sequence of 16s rRNA (Pseudomonas aeruginosa sp MPC 1) is submitted to Genbank in NCBI database (Ac.No-JF708077).
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spelling pubmed-31248032011-07-07 Isolation, identification and computational studies on Pseudomonas aeruginosa sp. strain MPC1 in tannery effluent Senthil, Renganathan Angel, Kanagamani Jini Malathi, Ravi Venkatesan, Dhanapal Bioinformation Hypothesis A study about isolation, identification and analysis of bacteria in waste water. Here the tannery effluent used as a sample for the entire analysis. A bacterial strain, designated MPC1 was isolated from a waste water sample collected from tannery effluent, Trichy, India and identified using a molecular approach. On the basis of the bacterial 16s rRNA gene sequence phylogeny and comparison of this gene sequence with sequence in RNA sequence database, it is considered that isolate is closely related to members of the Pseudomonas aeruginosa Sp. Phylogenetic and molecular evolutionary analyses were conducted using MEGA. Identification of regulatory elements and Transcription Factor with their binding sites in 16S rRNA gene of Pseudomonas aeruginosa mpc1 was performed using BPROM tool. The sequence of 16s rRNA (Pseudomonas aeruginosa sp MPC 1) is submitted to Genbank in NCBI database (Ac.No-JF708077). Biomedical Informatics 2011-05-26 /pmc/articles/PMC3124803/ /pubmed/21738311 Text en © 2011 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Hypothesis
Senthil, Renganathan
Angel, Kanagamani Jini
Malathi, Ravi
Venkatesan, Dhanapal
Isolation, identification and computational studies on Pseudomonas aeruginosa sp. strain MPC1 in tannery effluent
title Isolation, identification and computational studies on Pseudomonas aeruginosa sp. strain MPC1 in tannery effluent
title_full Isolation, identification and computational studies on Pseudomonas aeruginosa sp. strain MPC1 in tannery effluent
title_fullStr Isolation, identification and computational studies on Pseudomonas aeruginosa sp. strain MPC1 in tannery effluent
title_full_unstemmed Isolation, identification and computational studies on Pseudomonas aeruginosa sp. strain MPC1 in tannery effluent
title_short Isolation, identification and computational studies on Pseudomonas aeruginosa sp. strain MPC1 in tannery effluent
title_sort isolation, identification and computational studies on pseudomonas aeruginosa sp. strain mpc1 in tannery effluent
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3124803/
https://www.ncbi.nlm.nih.gov/pubmed/21738311
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