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On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion

Inferring population structure using Bayesian clustering programs often requires a priori specification of the number of subpopulations, [Image: see text], from which the sample has been drawn. Here, we explore the utility of a common Bayesian model selection criterion, the Deviance Information Crit...

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Detalles Bibliográficos
Autores principales: Gao, Hong, Bryc, Katarzyna, Bustamante, Carlos D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125185/
https://www.ncbi.nlm.nih.gov/pubmed/21738600
http://dx.doi.org/10.1371/journal.pone.0021014
Descripción
Sumario:Inferring population structure using Bayesian clustering programs often requires a priori specification of the number of subpopulations, [Image: see text], from which the sample has been drawn. Here, we explore the utility of a common Bayesian model selection criterion, the Deviance Information Criterion (DIC), for estimating [Image: see text]. We evaluate the accuracy of DIC, as well as other popular approaches, on datasets generated by coalescent simulations under various demographic scenarios. We find that DIC outperforms competing methods in many genetic contexts, validating its application in assessing population structure.