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On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion
Inferring population structure using Bayesian clustering programs often requires a priori specification of the number of subpopulations, [Image: see text], from which the sample has been drawn. Here, we explore the utility of a common Bayesian model selection criterion, the Deviance Information Crit...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125185/ https://www.ncbi.nlm.nih.gov/pubmed/21738600 http://dx.doi.org/10.1371/journal.pone.0021014 |
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author | Gao, Hong Bryc, Katarzyna Bustamante, Carlos D. |
author_facet | Gao, Hong Bryc, Katarzyna Bustamante, Carlos D. |
author_sort | Gao, Hong |
collection | PubMed |
description | Inferring population structure using Bayesian clustering programs often requires a priori specification of the number of subpopulations, [Image: see text], from which the sample has been drawn. Here, we explore the utility of a common Bayesian model selection criterion, the Deviance Information Criterion (DIC), for estimating [Image: see text]. We evaluate the accuracy of DIC, as well as other popular approaches, on datasets generated by coalescent simulations under various demographic scenarios. We find that DIC outperforms competing methods in many genetic contexts, validating its application in assessing population structure. |
format | Online Article Text |
id | pubmed-3125185 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-31251852011-07-07 On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion Gao, Hong Bryc, Katarzyna Bustamante, Carlos D. PLoS One Research Article Inferring population structure using Bayesian clustering programs often requires a priori specification of the number of subpopulations, [Image: see text], from which the sample has been drawn. Here, we explore the utility of a common Bayesian model selection criterion, the Deviance Information Criterion (DIC), for estimating [Image: see text]. We evaluate the accuracy of DIC, as well as other popular approaches, on datasets generated by coalescent simulations under various demographic scenarios. We find that DIC outperforms competing methods in many genetic contexts, validating its application in assessing population structure. Public Library of Science 2011-06-28 /pmc/articles/PMC3125185/ /pubmed/21738600 http://dx.doi.org/10.1371/journal.pone.0021014 Text en Gao et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Gao, Hong Bryc, Katarzyna Bustamante, Carlos D. On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion |
title | On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion |
title_full | On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion |
title_fullStr | On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion |
title_full_unstemmed | On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion |
title_short | On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion |
title_sort | on identifying the optimal number of population clusters via the deviance information criterion |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125185/ https://www.ncbi.nlm.nih.gov/pubmed/21738600 http://dx.doi.org/10.1371/journal.pone.0021014 |
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