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On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion

Inferring population structure using Bayesian clustering programs often requires a priori specification of the number of subpopulations, [Image: see text], from which the sample has been drawn. Here, we explore the utility of a common Bayesian model selection criterion, the Deviance Information Crit...

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Detalles Bibliográficos
Autores principales: Gao, Hong, Bryc, Katarzyna, Bustamante, Carlos D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125185/
https://www.ncbi.nlm.nih.gov/pubmed/21738600
http://dx.doi.org/10.1371/journal.pone.0021014
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author Gao, Hong
Bryc, Katarzyna
Bustamante, Carlos D.
author_facet Gao, Hong
Bryc, Katarzyna
Bustamante, Carlos D.
author_sort Gao, Hong
collection PubMed
description Inferring population structure using Bayesian clustering programs often requires a priori specification of the number of subpopulations, [Image: see text], from which the sample has been drawn. Here, we explore the utility of a common Bayesian model selection criterion, the Deviance Information Criterion (DIC), for estimating [Image: see text]. We evaluate the accuracy of DIC, as well as other popular approaches, on datasets generated by coalescent simulations under various demographic scenarios. We find that DIC outperforms competing methods in many genetic contexts, validating its application in assessing population structure.
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spelling pubmed-31251852011-07-07 On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion Gao, Hong Bryc, Katarzyna Bustamante, Carlos D. PLoS One Research Article Inferring population structure using Bayesian clustering programs often requires a priori specification of the number of subpopulations, [Image: see text], from which the sample has been drawn. Here, we explore the utility of a common Bayesian model selection criterion, the Deviance Information Criterion (DIC), for estimating [Image: see text]. We evaluate the accuracy of DIC, as well as other popular approaches, on datasets generated by coalescent simulations under various demographic scenarios. We find that DIC outperforms competing methods in many genetic contexts, validating its application in assessing population structure. Public Library of Science 2011-06-28 /pmc/articles/PMC3125185/ /pubmed/21738600 http://dx.doi.org/10.1371/journal.pone.0021014 Text en Gao et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Gao, Hong
Bryc, Katarzyna
Bustamante, Carlos D.
On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion
title On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion
title_full On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion
title_fullStr On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion
title_full_unstemmed On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion
title_short On Identifying the Optimal Number of Population Clusters via the Deviance Information Criterion
title_sort on identifying the optimal number of population clusters via the deviance information criterion
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3125185/
https://www.ncbi.nlm.nih.gov/pubmed/21738600
http://dx.doi.org/10.1371/journal.pone.0021014
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