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High-Throughput Behavioral Analysis in C. elegans

We have designed a real-time computer vision system, the Multi-Worm Tracker (MWT), that can simultaneously quantify the behavior of dozens of Caenorhabditis elegans on a traditional petri plate at video rates. Three traditional behavioral paradigms are examined using this system: spontaneous movemen...

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Detalles Bibliográficos
Autores principales: Swierczek, Nicholas A., Giles, Andrew C., Rankin, Catharine H., Kerr, Rex A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128206/
https://www.ncbi.nlm.nih.gov/pubmed/21642964
http://dx.doi.org/10.1038/nmeth.1625
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author Swierczek, Nicholas A.
Giles, Andrew C.
Rankin, Catharine H.
Kerr, Rex A.
author_facet Swierczek, Nicholas A.
Giles, Andrew C.
Rankin, Catharine H.
Kerr, Rex A.
author_sort Swierczek, Nicholas A.
collection PubMed
description We have designed a real-time computer vision system, the Multi-Worm Tracker (MWT), that can simultaneously quantify the behavior of dozens of Caenorhabditis elegans on a traditional petri plate at video rates. Three traditional behavioral paradigms are examined using this system: spontaneous movement on food, where the behavior changes over tens of minutes; chemotaxis, where turning events must be detected accurately to determine strategy; and habituation of response to tap, where the response is stochastic and changes over time. In each case, manual analysis or automated single-worm tracking would be tedious and time-consuming, but the MWT system allows rapid quantification of behavior with minimal human effort. Thus, this system will enablelarge scale forward and reverse genetic screens for complex behaviors.
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spelling pubmed-31282062012-01-01 High-Throughput Behavioral Analysis in C. elegans Swierczek, Nicholas A. Giles, Andrew C. Rankin, Catharine H. Kerr, Rex A. Nat Methods Article We have designed a real-time computer vision system, the Multi-Worm Tracker (MWT), that can simultaneously quantify the behavior of dozens of Caenorhabditis elegans on a traditional petri plate at video rates. Three traditional behavioral paradigms are examined using this system: spontaneous movement on food, where the behavior changes over tens of minutes; chemotaxis, where turning events must be detected accurately to determine strategy; and habituation of response to tap, where the response is stochastic and changes over time. In each case, manual analysis or automated single-worm tracking would be tedious and time-consuming, but the MWT system allows rapid quantification of behavior with minimal human effort. Thus, this system will enablelarge scale forward and reverse genetic screens for complex behaviors. 2011-06-05 /pmc/articles/PMC3128206/ /pubmed/21642964 http://dx.doi.org/10.1038/nmeth.1625 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Swierczek, Nicholas A.
Giles, Andrew C.
Rankin, Catharine H.
Kerr, Rex A.
High-Throughput Behavioral Analysis in C. elegans
title High-Throughput Behavioral Analysis in C. elegans
title_full High-Throughput Behavioral Analysis in C. elegans
title_fullStr High-Throughput Behavioral Analysis in C. elegans
title_full_unstemmed High-Throughput Behavioral Analysis in C. elegans
title_short High-Throughput Behavioral Analysis in C. elegans
title_sort high-throughput behavioral analysis in c. elegans
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128206/
https://www.ncbi.nlm.nih.gov/pubmed/21642964
http://dx.doi.org/10.1038/nmeth.1625
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