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High-Throughput Behavioral Analysis in C. elegans
We have designed a real-time computer vision system, the Multi-Worm Tracker (MWT), that can simultaneously quantify the behavior of dozens of Caenorhabditis elegans on a traditional petri plate at video rates. Three traditional behavioral paradigms are examined using this system: spontaneous movemen...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2011
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128206/ https://www.ncbi.nlm.nih.gov/pubmed/21642964 http://dx.doi.org/10.1038/nmeth.1625 |
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author | Swierczek, Nicholas A. Giles, Andrew C. Rankin, Catharine H. Kerr, Rex A. |
author_facet | Swierczek, Nicholas A. Giles, Andrew C. Rankin, Catharine H. Kerr, Rex A. |
author_sort | Swierczek, Nicholas A. |
collection | PubMed |
description | We have designed a real-time computer vision system, the Multi-Worm Tracker (MWT), that can simultaneously quantify the behavior of dozens of Caenorhabditis elegans on a traditional petri plate at video rates. Three traditional behavioral paradigms are examined using this system: spontaneous movement on food, where the behavior changes over tens of minutes; chemotaxis, where turning events must be detected accurately to determine strategy; and habituation of response to tap, where the response is stochastic and changes over time. In each case, manual analysis or automated single-worm tracking would be tedious and time-consuming, but the MWT system allows rapid quantification of behavior with minimal human effort. Thus, this system will enablelarge scale forward and reverse genetic screens for complex behaviors. |
format | Online Article Text |
id | pubmed-3128206 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
record_format | MEDLINE/PubMed |
spelling | pubmed-31282062012-01-01 High-Throughput Behavioral Analysis in C. elegans Swierczek, Nicholas A. Giles, Andrew C. Rankin, Catharine H. Kerr, Rex A. Nat Methods Article We have designed a real-time computer vision system, the Multi-Worm Tracker (MWT), that can simultaneously quantify the behavior of dozens of Caenorhabditis elegans on a traditional petri plate at video rates. Three traditional behavioral paradigms are examined using this system: spontaneous movement on food, where the behavior changes over tens of minutes; chemotaxis, where turning events must be detected accurately to determine strategy; and habituation of response to tap, where the response is stochastic and changes over time. In each case, manual analysis or automated single-worm tracking would be tedious and time-consuming, but the MWT system allows rapid quantification of behavior with minimal human effort. Thus, this system will enablelarge scale forward and reverse genetic screens for complex behaviors. 2011-06-05 /pmc/articles/PMC3128206/ /pubmed/21642964 http://dx.doi.org/10.1038/nmeth.1625 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Swierczek, Nicholas A. Giles, Andrew C. Rankin, Catharine H. Kerr, Rex A. High-Throughput Behavioral Analysis in C. elegans |
title | High-Throughput Behavioral Analysis in C. elegans |
title_full | High-Throughput Behavioral Analysis in C. elegans |
title_fullStr | High-Throughput Behavioral Analysis in C. elegans |
title_full_unstemmed | High-Throughput Behavioral Analysis in C. elegans |
title_short | High-Throughput Behavioral Analysis in C. elegans |
title_sort | high-throughput behavioral analysis in c. elegans |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128206/ https://www.ncbi.nlm.nih.gov/pubmed/21642964 http://dx.doi.org/10.1038/nmeth.1625 |
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